Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00725 ATGGATATTGAGACATTGCTCAAAGAAACCTTTGTCTCACAGCCCTTAGAAGAAAGCTGCATGAAAGATATGATTCCTTTGGGAAATCCTTCATCTCATGAATTCCTGCAAGATTTTCACCATATTGACCAGTTTCACTTGAATGTGCCTTCATCCAATAACTCAATAATCCATAACCCAACATTTGATGCTTTTGACAATTTCACCATTACAGGTTCATCGCCTGGTTTAGAAGCATACGAGTGCAAGCCTTTTGTGGAGAACAGCGTTAGCGGGCATACTCATGTTATGGACAATTTCCTTTACGGAAATTATAACTTGAACCTCTCTCAAAGGAATATTGAACTAGATATGATGGTTGCTAACCAAAGCTTTTTTCCTTTTAGTCCTCAAGAAATCAAGCCCTCCAATTTTGTTTTACCAGATGAAGTTTCATGCATATCCCCAGTGAATTATTACAGAAGAACTGGCGTTAACCAAAATAATAAATCCCATGCAACCATTCAAAGAACGCACAAAGTTCGCAAGAAGTCCTACAAAGTAAAGGGGCATTGGTCACTAGAAGAAGATGGATTATTGATTCAACTGGTGGAACAATACGGATTGAGGAAGTGGTCTCATATTGCTAAGATATTGCCTGGTAGAATTGGGAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACACATGGAATGGTGAAGAGGATAAAATACTAATCGAAGCTCATGCTGAGATAGGAAATAAATGGGCAGAGATTGCTAAAAGGTTGCCTGGAAGAACTGAGAACTCGATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGATCAAAGTACCCTAGAGGCACTCTTCTACAAGAGTATATCAAGAGCTTGAACTTAGACAAGAACCCCCTAAGAGATTATAGGAGAAAATCTTCTGTCAATTATGCTAGTCGCATGAGTATCAAAACCAGCACAAGCAAAACCACTGCGCCAGCTTTGCCCCAGACAGCTTTTCAATTTTGTGCCACTGAATGCTTGGCACCAAATTATGATTTCAATGTGGTCCCAGATTTTTTCTTCGGTGAGAATTTGTTTGAAGAAGGGTGCAGTATCGATTCTCTTCTAGATGGTGTGCCTTGTGCTCCTCTTACGGATAACAAAAAGTTTGAAGGAAAATTGCTATGTGATGCTATGATGGAGGGAATAAAGCATTGTGATTATGGAGGAATGGAGTGTGTTCCAGCTGTTAATATCGATGAGAATCATGTTGAGACAGATATGCCATTAGAGATGTTGGATGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATCTCTCGGATTAATAATGAAGCTGTTTATGTATAA 1395 0.3943 MDIETLLKETFVSQPLEESCMKDMIPLGNPSSHEFLQDFHHIDQFHLNVPSSNNSIIHNPTFDAFDNFTITGSSPGLEAYECKPFVENSVSGHTHVMDNFLYGNYNLNLSQRNIELDMMVANQSFFPFSPQEIKPSNFVLPDEVSCISPVNYYRRTGVNQNNKSHATIQRTHKVRKKSYKVKGHWSLEEDGLLIQLVEQYGLRKWSHIAKILPGRIGKQCRERWHNHLRPDIKKDTWNGEEDKILIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPLRDYRRKSSVNYASRMSIKTSTSKTTAPALPQTAFQFCATECLAPNYDFNVVPDFFFGENLFEEGCSIDSLLDGVPCAPLTDNKKFEGKLLCDAMMEGIKHCDYGGMECVPAVNIDENHVETDMPLEMLDVEVKKELDLVEMISRINNEAVYV* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00725 464 FunFam Transcriptional activator Myb isoform A 181 234 - -
Lapu9g00725 464 ProSiteProfiles Myb-like domain profile. 229 279 IPR001005 -
Lapu9g00725 464 Pfam Myb-like DNA-binding domain 185 243 - -
Lapu9g00725 464 Gene3D - 181 233 - -
Lapu9g00725 464 SUPERFAMILY Homeodomain-like 180 275 IPR009057 -
Lapu9g00725 464 CDD SANT 236 279 IPR001005 -
Lapu9g00725 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 232 IPR017930 -
Lapu9g00725 464 SMART sant 181 230 IPR001005 -
Lapu9g00725 464 SMART sant 233 281 IPR001005 -
Lapu9g00725 464 Gene3D - 236 296 - -
Lapu9g00725 464 CDD SANT 185 228 IPR001005 -
Lapu9g00725 464 ProSiteProfiles Myb-like domain profile. 177 228 IPR001005 -
Lapu9g00725 464 PANTHER MYB PROTEIN-RELATED 163 328 - -
Lapu9g00725 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 283 IPR017930 -
Lapu9g00725 464 FunFam Transcription factor MYB119 235 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00725 Lapu-Chr9 9318106 9319846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00725 77 387 MYB Transcription Factor Family AT4G18770 51.335 1.07e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g00725 Myb_DNA-bind_6 5.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00725 K09422 - gmx:102662267 704.516