Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00723 ATGGAAGAAGATCAAGAAGTGAAGCACTTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTAGGAGGTCACATGAGGTCACATGTCACCAATGTTTCAACCGAGACAGAGAAGCTTTCATCTTTCAACAACTGCAACAACAATGGTGGAGATAGAGACACGGGGATAATGGGTTCTGAAGGGGGAACTAGCAATGGAGGCTATGGTCTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGGATTCAAGTGAGGATACTTTGTTGGTGTTGGACAAGTTATGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAAAACAGCAGCAGCTTGTTGGAGGATCAAGATTCGTGGACTGAAAATAACAATGCTAGCCAGAAGATGGTGTTGGATGATAGCCACTCTGACAATGAAGCCACTGCTCCAAACCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACGTGGCCCCATCAACTTCTTCTGCGTCCTTTGTTTCTGAGGCTGAGCAGGAGCAGGAAGAGGTTGCGATGAGTTTGATGATGCTTAGCAGGGATGTTAGTCCTTGGTGTGGTCTCAATTCTGTTAACTCATTGCACTTTGAATCTCCTTCTTTGGTTCCAACCAATGTGGATTCTAAGGCGGAAGGCAAGAGGGTTGTCTCCAATGGTTCTGAAAAAAAGGTTACCAAACCAAAGGATATGAAGTGGGAGATTGGCAATTTGGATGCTTCAAATCTCAACTCCGAAGGGAAAATAAGCTCAGAACTTTTGGGTACTGAGAGTCCTGGAATTGGGGACAAGACCACGGTTTCCATTCACGGGAATGATGAGAAGGCCGAGCTTGATACTAGTTCTGCATTTGAGGACAATGGAATAGATGATAATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAATTTAAGGCAAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCTCCAGAAGCTGAATTGAGCAAAAGCTCCAAGAGAGGACAATTTGAGTGTACTACTTGCAAGAAAATCTTCCATTCATACCAAGCACTTGGAGGCCACAGAGCTAGTCACAAGAAGATGAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCGCTGAGTTGGAAGCAGACCTCTCCCCTGACCCAACAACACAAAGTAAGCTCCTGAAGAATGAATATGCGGAAGAACATGAGATGGTTACTGTTACTACTGCTACTACTGGTTTTGATAATGAGGAAGAGAGAGAGAGAGAGTCCAAAAAGGGGAAAGGTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCTATCTGGCCAAGCCCTGGGTGGCCACAAGAGATCTCATCACTTGCCTAGTGGGTCTGAGAGTGCTAGAAACTGTCAAAGTCAAACAGTTGTACTTGAGGAAGCAGCCCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGCCATTCTGAGCCTTACAAACCTTGGTGGGTAATAGGAGGCGGCCACAAGCAAGAGGCACTGGTAGGCCTCATTTCTAACTAA 1638 0.4524 MEEDQEVKHLCKFCSKSFPCGRSLGGHMRSHVTNVSTETEKLSSFNNCNNNGGDRDTGIMGSEGGTSNGGYGLRENPKKTWRFTDSSEDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNSSSLLEDQDSWTENNNASQKMVLDDSHSDNEATAPNRRRRSKRRRTRYVAPSTSSASFVSEAEQEQEEVAMSLMMLSRDVSPWCGLNSVNSLHFESPSLVPTNVDSKAEGKRVVSNGSEKKVTKPKDMKWEIGNLDASNLNSEGKISSELLGTESPGIGDKTTVSIHGNDEKAELDTSSAFEDNGIDDNRNNKYTSIKAKYLDSEFKASSSKSWVKNKSPEAELSKSSKRGQFECTTCKKIFHSYQALGGHRASHKKMKGCFASRNESSENSAELEADLSPDPTTQSKLLKNEYAEEHEMVTVTTATTGFDNEEERERESKKGKGHECPICLKVFLSGQALGGHKRSHHLPSGSESARNCQSQTVVLEEAAPEIRDFFDLNLPASTEEEGNSHGHSEPYKPWWVIGGGHKQEALVGLISN* 546
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00723 545 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Lapu9g00723 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 358 385 IPR013087 -
Lapu9g00723 545 Pfam C2H2-type zinc finger 98 119 - -
Lapu9g00723 545 Pfam C2H2-type zinc finger 451 474 - -
Lapu9g00723 545 Pfam C2H2-type zinc finger 9 31 - -
Lapu9g00723 545 Pfam C2H2-type zinc finger 358 382 - -
Lapu9g00723 545 SMART c2h2final6 451 473 IPR013087 -
Lapu9g00723 545 SMART c2h2final6 358 380 IPR013087 -
Lapu9g00723 545 SMART c2h2final6 96 118 IPR013087 -
Lapu9g00723 545 SMART c2h2final6 9 31 IPR013087 -
Lapu9g00723 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Lapu9g00723 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 451 473 IPR013087 -
Lapu9g00723 545 MobiDBLite consensus disorder prediction 173 187 - -
Lapu9g00723 545 SUPERFAMILY beta-beta-alpha zinc fingers 97 380 IPR036236 -
Lapu9g00723 545 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Lapu9g00723 545 MobiDBLite consensus disorder prediction 53 73 - -
Lapu9g00723 545 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 528 - -
Lapu9g00723 545 SUPERFAMILY beta-beta-alpha zinc fingers 6 34 IPR036236 -
Lapu9g00723 545 ProSitePatterns Zinc finger C2H2 type domain signature. 360 380 IPR013087 -
Lapu9g00723 545 MobiDBLite consensus disorder prediction 145 187 - -
Lapu9g00723 545 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Lapu9g00723 545 Gene3D Classic Zinc Finger 355 473 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu9g00723 Lapu-Chr9 9271277 9272914 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00723 1 513 C2H2 Transcription Factor Family AT1G26610 31.408 1.32e-51 181
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu9g00723 zf-C2H2_6 8.3e-11 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00723 - - vra:106757260 896.73