Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu9g00723 | ATGGAAGAAGATCAAGAAGTGAAGCACTTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTAGGAGGTCACATGAGGTCACATGTCACCAATGTTTCAACCGAGACAGAGAAGCTTTCATCTTTCAACAACTGCAACAACAATGGTGGAGATAGAGACACGGGGATAATGGGTTCTGAAGGGGGAACTAGCAATGGAGGCTATGGTCTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGGATTCAAGTGAGGATACTTTGTTGGTGTTGGACAAGTTATGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAAAACAGCAGCAGCTTGTTGGAGGATCAAGATTCGTGGACTGAAAATAACAATGCTAGCCAGAAGATGGTGTTGGATGATAGCCACTCTGACAATGAAGCCACTGCTCCAAACCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACGTGGCCCCATCAACTTCTTCTGCGTCCTTTGTTTCTGAGGCTGAGCAGGAGCAGGAAGAGGTTGCGATGAGTTTGATGATGCTTAGCAGGGATGTTAGTCCTTGGTGTGGTCTCAATTCTGTTAACTCATTGCACTTTGAATCTCCTTCTTTGGTTCCAACCAATGTGGATTCTAAGGCGGAAGGCAAGAGGGTTGTCTCCAATGGTTCTGAAAAAAAGGTTACCAAACCAAAGGATATGAAGTGGGAGATTGGCAATTTGGATGCTTCAAATCTCAACTCCGAAGGGAAAATAAGCTCAGAACTTTTGGGTACTGAGAGTCCTGGAATTGGGGACAAGACCACGGTTTCCATTCACGGGAATGATGAGAAGGCCGAGCTTGATACTAGTTCTGCATTTGAGGACAATGGAATAGATGATAATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAATTTAAGGCAAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCTCCAGAAGCTGAATTGAGCAAAAGCTCCAAGAGAGGACAATTTGAGTGTACTACTTGCAAGAAAATCTTCCATTCATACCAAGCACTTGGAGGCCACAGAGCTAGTCACAAGAAGATGAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCGCTGAGTTGGAAGCAGACCTCTCCCCTGACCCAACAACACAAAGTAAGCTCCTGAAGAATGAATATGCGGAAGAACATGAGATGGTTACTGTTACTACTGCTACTACTGGTTTTGATAATGAGGAAGAGAGAGAGAGAGAGTCCAAAAAGGGGAAAGGTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCTATCTGGCCAAGCCCTGGGTGGCCACAAGAGATCTCATCACTTGCCTAGTGGGTCTGAGAGTGCTAGAAACTGTCAAAGTCAAACAGTTGTACTTGAGGAAGCAGCCCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGCCATTCTGAGCCTTACAAACCTTGGTGGGTAATAGGAGGCGGCCACAAGCAAGAGGCACTGGTAGGCCTCATTTCTAACTAA | 1638 | 0.4524 | MEEDQEVKHLCKFCSKSFPCGRSLGGHMRSHVTNVSTETEKLSSFNNCNNNGGDRDTGIMGSEGGTSNGGYGLRENPKKTWRFTDSSEDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNSSSLLEDQDSWTENNNASQKMVLDDSHSDNEATAPNRRRRSKRRRTRYVAPSTSSASFVSEAEQEQEEVAMSLMMLSRDVSPWCGLNSVNSLHFESPSLVPTNVDSKAEGKRVVSNGSEKKVTKPKDMKWEIGNLDASNLNSEGKISSELLGTESPGIGDKTTVSIHGNDEKAELDTSSAFEDNGIDDNRNNKYTSIKAKYLDSEFKASSSKSWVKNKSPEAELSKSSKRGQFECTTCKKIFHSYQALGGHRASHKKMKGCFASRNESSENSAELEADLSPDPTTQSKLLKNEYAEEHEMVTVTTATTGFDNEEERERESKKGKGHECPICLKVFLSGQALGGHKRSHHLPSGSESARNCQSQTVVLEEAAPEIRDFFDLNLPASTEEEGNSHGHSEPYKPWWVIGGGHKQEALVGLISN* | 546 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu9g00723 | 545 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 98 | 118 | IPR013087 | - | |
Lapu9g00723 | 545 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 358 | 385 | IPR013087 | - | |
Lapu9g00723 | 545 | Pfam | C2H2-type zinc finger | 98 | 119 | - | - | |
Lapu9g00723 | 545 | Pfam | C2H2-type zinc finger | 451 | 474 | - | - | |
Lapu9g00723 | 545 | Pfam | C2H2-type zinc finger | 9 | 31 | - | - | |
Lapu9g00723 | 545 | Pfam | C2H2-type zinc finger | 358 | 382 | - | - | |
Lapu9g00723 | 545 | SMART | c2h2final6 | 451 | 473 | IPR013087 | - | |
Lapu9g00723 | 545 | SMART | c2h2final6 | 358 | 380 | IPR013087 | - | |
Lapu9g00723 | 545 | SMART | c2h2final6 | 96 | 118 | IPR013087 | - | |
Lapu9g00723 | 545 | SMART | c2h2final6 | 9 | 31 | IPR013087 | - | |
Lapu9g00723 | 545 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 96 | 123 | IPR013087 | - | |
Lapu9g00723 | 545 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 451 | 473 | IPR013087 | - | |
Lapu9g00723 | 545 | MobiDBLite | consensus disorder prediction | 173 | 187 | - | - | |
Lapu9g00723 | 545 | SUPERFAMILY | beta-beta-alpha zinc fingers | 97 | 380 | IPR036236 | - | |
Lapu9g00723 | 545 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 9 | 36 | IPR013087 | - | |
Lapu9g00723 | 545 | MobiDBLite | consensus disorder prediction | 53 | 73 | - | - | |
Lapu9g00723 | 545 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 528 | - | - | |
Lapu9g00723 | 545 | SUPERFAMILY | beta-beta-alpha zinc fingers | 6 | 34 | IPR036236 | - | |
Lapu9g00723 | 545 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 360 | 380 | IPR013087 | - | |
Lapu9g00723 | 545 | MobiDBLite | consensus disorder prediction | 145 | 187 | - | - | |
Lapu9g00723 | 545 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 11 | 31 | IPR013087 | - | |
Lapu9g00723 | 545 | Gene3D | Classic Zinc Finger | 355 | 473 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu9g00723 | Lapu-Chr9 | 9271277 | 9272914 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu9g00723 | 1 | 513 | C2H2 Transcription Factor Family | AT1G26610 | 31.408 | 1.32e-51 | 181 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lapu9g00723 | zf-C2H2_6 | 8.3e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu9g00723 | - | - | vra:106757260 | 896.73 |