Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00720 ATGGAACTCACCGAAGAACAACAACGACAAGTGGAAGCGAACCGTGCAGCGGCGATCGCAAAACGCAAAGCGTTCTTAGAATCCAGAGCACAACAACAAGAACAACCTCATCCTGACGGAGAAAACACCACCAAACCCAACCTTTGGCACCTTTTCAAGTGCCAAAAGTTCCCTGTATCCCAATCCCCAAAGTTCCTTGCCAGACTCGAAATATGCTTGCCCGATTCATTCTCCATCACACCCATTCCTCTCCCTTCATTCCCCTTCCCCGGTCACCAGCATTGTTTCTCCACTCTAAACTCCATTCTCTCACATGTGATGCCTTCGCACTTCACGCAGACCAGCGGAGGGGTCAAGGCCAGCGTGTTTAAGCTGACGGAGTACCACGCCGTGCTCAGACAGTTAAAGGCCGCGGCCAAGGCGCTGCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTGGTGGAGCGCCTCTCGCATTCGGTCGCTGCTGGGCGGTGGACCCCGGTGCGGCCAGAGCACTTGGCCGACGAGGAGGTAGAGCGCCTGATCGCGAAACTCCCGAGGACTCTCCTAGACGTGTTGCTGCCTTTCCAGCACGAAGGACTGCGGTTCGCATTGAGAAGAGGCGCGCGGTGCCTCATTGCTGATGATATGGGCCTCGGGAAAACGCTCCAGGCTATTGCTATTGCAGGTTGTTTTCTGGATGAAGGGTCTATACTCGTGGTTTGTCCTGCTGTGTTGCGGTTTTCGTGGGCCGAGGAATTGGAGCGCTGGCTTCCTTTCTGCTTGCCGGGTGATATACATCTCGTTTTTGGCCATCAAGACAATCCTATATATTTAACAAGAAGCCCTAGAGTTGTTGTCATTTCTTATACCATGCTTCATCGTCTAAGAAAGAACATGCTTGAACATGAATGGGCTCTCCTGATTGTTGATGAATCTCATCATGTGCGTTGTACGAAGAAAACAGAACCTGGAGAGATACAGACTGTTATTGATGTGGCTTCAAAAGTCAACCGTATAATTCTGCTATCAGGGACACCTTCTCTGTCAAGACCGTATGACATATACAACCAGATAAATATGTTATGGCCTGGTTTGCTTGGGAAGACTAAATACGAGTTTGCAAAGACTTATTGCGATTTCAAATATATCAAAGGCGTCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATCCGCTTGGAAGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGCTACCTCCAAAACGACGGCAAATGATAAGACTGCTGATAAAGAGATCGGATATAGTTGCTGCTAAAACTGCAATTGGCGTATTAAGTATTGATGCCACTGAAAGGGAAAGTGAAGACCTACCTTTGGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAAGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGGCCTCCATCCAATTGTTGCCGGATCAGAGAATGCTTCAAAAATGATAGTTTTTGCTCATCACCACAAAGTTCTCGATGGAGTACAGGAGTTTATATGTGAGAAAGGTATAAGTTTTGTACGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTAGTGTTCTTGGAGCTACCACAATGCCCAACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGTCAAACAAATGCAGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAATAAAAGTTTGCAACGTGTTTCATCTACAACTGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACTCATCTTTTAAAAGTGATAATTGTGAAGAACAATCTGCATGCAAAGATGCAGTAGGTGAAACACAATTGGATGAGCAACCTTCTGCAGTAAATTCAAATGAATCAGAAGCAAATCAAGATGATAAATCTGGCGAGGGAACTTCTTTTCTTAACAAGTCAGTTCAGAGTTTTAATGCTTTGGCTGATGATGTCTCCTGCCAAGATTTAGGCAAAGCTTCAATTCCGGATGGAAATTGTGATGTTGATGTTTTCGAAGATGTGGAGAGATTTCCTGGAAAGAGTTTTGAAGACACAGATCCATTGCGAGATATGAAATCAGTTTCAACAACAGAAGCAGATGACAACCAGTCTGTTCAGCTGGTTGAAGCCAATAGTCATTGCTCTAATGAAGTTGATTTTCTGCGATTTGAGGTGAGCCCGTACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTTATGAAAATTTTCGACCAGAGGAACTTGAGTTATTATGTTCTGTTGCTCCTGATGAGAAACAGGCTCATGATGAAAAACAGAAAATAAAGTTTGTATCTGTCAAGGACAACCCCTCCTGTAGGCATGCTCTTCTGGCTTTTGCGGAAGAATGGAAGAACTTAAGGTCAATTGAACGCAGGAAGTTAATTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTGTGCTATTTGAGTGAAAGCAACAACCACAATAACAAAGGATTATTAAATGGTGGAAGTATAAGACGCAAGACACCCTTAGTAGAGATTAGCTATCCTTTACCACCAGATGCAGTTTGGAGGAAGGTTTATCTGCGAAGTGGCCTCGGTAAGAAGGAAAAGGAATACACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGAGTAACAATGCCAAGAAACCTGAATTTCTGGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGAATGAGAACTAGCAACAGATTTCTCCGTGAGGAACTTTTCAAAATTGAACATGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTAGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGGCGAGAGTTTATAGAGAAAATAGCACCAAATGTTGCTAAACGGAAGAACATGCTTGAGAAACTTATCAATGAACCAACTGAAGGAAATGCATGGCATGCTGATCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAGCTAGAGAATATGAGGACTCTTTGTGTGGCCTGCCACTATGATGTTACTGCCGCACAATGTGCTGAACGACGTAAAGCAAGAGCAAATGCCAAGAAAAAACTGAAACAGTTAATGACTAGTATGAAAAACGATAATAAGGTTTCTGCTGGCGCTAATATTAAGGACCATATGATTATCGATGAACGAGGGAGTACTATAATCGAGGATGAGCTTTTAGTCGAGGTCCCTGGAAGTGCCTATTCTTTAGCCGACAGCTAA 3504 0.4346 MELTEEQQRQVEANRAAAIAKRKAFLESRAQQQEQPHPDGENTTKPNLWHLFKCQKFPVSQSPKFLARLEICLPDSFSITPIPLPSFPFPGHQHCFSTLNSILSHVMPSHFTQTSGGVKASVFKLTEYHAVLRQLKAAAKALQVEEIPWATFNVVERLSHSVAAGRWTPVRPEHLADEEVERLIAKLPRTLLDVLLPFQHEGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFSWAEELERWLPFCLPGDIHLVFGHQDNPIYLTRSPRVVVISYTMLHRLRKNMLEHEWALLIVDESHHVRCTKKTEPGEIQTVIDVASKVNRIILLSGTPSLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDFKYIKGVQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQMIRLLIKRSDIVAAKTAIGVLSIDATERESEDLPLENLDEPDGKLSYQELGIAKLSGFREWLGLHPIVAGSENASKMIVFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSSTTDGKYDAMKEIEVEGISYLDSSFKSDNCEEQSACKDAVGETQLDEQPSAVNSNESEANQDDKSGEGTSFLNKSVQSFNALADDVSCQDLGKASIPDGNCDVDVFEDVERFPGKSFEDTDPLRDMKSVSTTEADDNQSVQLVEANSHCSNEVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLCSVAPDEKQAHDEKQKIKFVSVKDNPSCRHALLAFAEEWKNLRSIERRKLIGKPLQLPLAVELCYLSESNNHNNKGLLNGGSIRRKTPLVEISYPLPPDAVWRKVYLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCLSNNAKKPEFLEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQLDCHKLVKDTRPLSLERRREFIEKIAPNVAKRKNMLEKLINEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRKARANAKKKLKQLMTSMKNDNKVSAGANIKDHMIIDERGSTIIEDELLVEVPGSAYSLADS* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00720 1167 Gene3D - 171 410 IPR038718 -
Lapu9g00720 1167 Coils Coil 125 145 - -
Lapu9g00720 1167 Gene3D - 411 696 IPR027417 -
Lapu9g00720 1167 SMART ultradead3 191 386 IPR014001 -
Lapu9g00720 1167 MobiDBLite consensus disorder prediction 682 706 - -
Lapu9g00720 1167 Pfam HNH endonuclease 1064 1095 IPR002711 GO:0003676|GO:0004519|GO:0008270
Lapu9g00720 1167 CDD SF2_C_SNF 505 615 - -
Lapu9g00720 1167 Pfam SNF2-related domain 211 440 IPR000330 GO:0005524|GO:0140658
Lapu9g00720 1167 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1115 - -
Lapu9g00720 1167 MobiDBLite consensus disorder prediction 22 45 - -
Lapu9g00720 1167 FunFam SNF2 DNA repair protein, putative 169 417 - -
Lapu9g00720 1167 SMART helicmild6 521 604 IPR001650 -
Lapu9g00720 1167 MobiDBLite consensus disorder prediction 672 706 - -
Lapu9g00720 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 650 IPR001650 -
Lapu9g00720 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 657 IPR027417 -
Lapu9g00720 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 418 IPR027417 -
Lapu9g00720 1167 Pfam Helicase conserved C-terminal domain 504 604 IPR001650 -
Lapu9g00720 1167 CDD HNHc 1058 1098 IPR003615 -
Lapu9g00720 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 367 IPR014001 -
Lapu9g00720 1167 Gene3D - 989 1127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00720 Lapu-Chr9 9181557 9218724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00720 501 657 RAD5 or RAD16-like Gene Family AT1G11100 34.783 4.05e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu9g00720 SNF2_N 1.2e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00720 K25861 - gmx:100788690 1990.7