Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00715 ATGTCGGATGAAGAACACCACTTCGAATCCAAGGCCGATGCCGGAGCCTCCAAGACCTATCCACAGCAAGCCGGCACCATTCGCAAAAACGGCTACATCGTCATCAAGGGTCGTCCCTGCAAGGTTGTTGAAGTTTCTACTTCCAAGACTGGTAAGCACGGTCATGCTAAGTGTCACTTTGTTGGCATTGATATTTTCACTGCCAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCATGTGAATCGTACTGATTACCAGTTGATTGATATTTCTGAGGATGGATTTGTTAGCTTGCTTACTGAAAATGGGAACACCAAAGATGACCTGAGGCTTCCTACCGATGACAATCTGCTTACTCAGATAAGAGAAGAAAACAAGAAGATAAAGGATGGATTTGCTGAGGGTAAGGACCTTGTTGTTTCAGTTATGTCTGCTATGGGCGAGGAGCAGATCAATGCCCTGAAGGATATTGGACCAAAGAACTAG 504 0.4544 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIREENKKIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPKN* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00715 167 FunFam Eukaryotic translation initiation factor 5A 86 165 - -
Lapu9g00715 167 CDD S1_eIF5A 86 163 - -
Lapu9g00715 167 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 164 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu9g00715 167 Gene3D - 1 85 IPR014722 -
Lapu9g00715 167 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Lapu9g00715 167 NCBIfam translation initiation factor IF-5A 17 160 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu9g00715 167 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 161 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu9g00715 167 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lapu9g00715 167 SMART eIF_5a_2 85 161 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu9g00715 167 MobiDBLite consensus disorder prediction 1 21 - -
Lapu9g00715 167 PIRSF Transl_init_eIF5A 1 164 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu9g00715 167 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu9g00715 167 Gene3D - 86 166 IPR012340 -
Lapu9g00715 167 SUPERFAMILY Nucleic acid-binding proteins 86 163 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00715 Lapu-Chr9 9064298 9067431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00715 1 166 Eukaryotic Initiation Factors Gene Family AT1G13950 86.747 4.17e-103 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00715 K03263 K02180 fve:101296375 312.768