Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00708 ATGGAGTCTGGTGAGGAGATTAATTTGAATATAGAAAGTGGTGGTGGAAATAATGGGAAGAGTGGTGATGGGTTCATTGATAGAAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGGTGTTCTTATCAGGTGACCTTAGTCAAGTCGCCGAGACAGGTAATTGACGCACTGAATGCAGAGGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCAACAAAGAAGGGCATGAAGATGTTGAAGTACATAGCACGGGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCTGACTATCTAGTAAAGCCCTTACGTACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAATATCTTGAATTATGAGTTTGATCTTGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCAACAATCCAGAGGTGGGATTATCAGTCCAGCAAGAGCTAGAGTCTACTATTGCAATTGCTGCTGCTGTTGAGGAACCTCTTGATGCTCATGCATCGGAACAGGGGCCTGATGTGGATGGATTTAATGATCACCTTGCAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAATTAAGGATAGGGGAGTCATCAGCCTTTTTCACGTATGTTAAAGCATCTATACTGAAGAGCAATTTTGAAGGGGTTGTTAATGTAGAAAACAATGGTGCTGCACATGTAAGGATGGAAGTTATGCATCAAGCTTGTGCTCAACAAGGGATTAATGACCTTCAAACACGTGAAAATGGAGAGAACTGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAGTAGTATACCTGATTCTCTCTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACCGCAAAAGCACAAGGAAGAAAATTTCCGTCAGGGTGTGATGCATCCAAGAAATGGGACTCATTGTTCTGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCTGGAGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATGCAGGACCTACAGAATCATCCCAGTACAGCTATGATTGCTCAATACAGTCATCTTCCCCAAGGTGGTCCTCATGGAACGGGGATGGCATCTTTCCCATACTACCCTATGAGTATATGCTTACAACCTGGTCAGGTTCCTCAACCCCATTCATGGCCATCATTTGGAAGCTCAAGTTCATCCGAACCAAAATTAAGTAAAGTTGACAGGAGAGAAGCAGCACTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACCGGAAACGACTTGCTGAAAGGCGGCCTCGAGTGAGGGGACAGTTTGTCAGAAAGTTAAACAGTGCCAATGTGGATCTGAATGGACAGCCTGCATCAATTGACTATGATGAAGATGATGACGAGGAGGATGAAGATGACCAGGGAGCGAGAGATTCTTCTCCTGAGGATGCTTGA 1686 0.4324 MESGEEINLNIESGGGNNGKSGDGFIDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTLVKSPRQVIDALNAEGQHIDIILAELDLPTKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSKRSNNPEVGLSVQQELESTIAIAAAVEEPLDAHASEQGPDVDGFNDHLAAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVENNGAAHVRMEVMHQACAQQGINDLQTRENGENCESQSQDDLPSSSSIPDSLSIERSCTPPASMEVSPQKHKEENFRQGVMHPRNGTHCSEHEVSGMASQHAYPYYISGVVNHVMMPSSAQMYHQKNMQDLQNHPSTAMIAQYSHLPQGGPHGTGMASFPYYPMSICLQPGQVPQPHSWPSFGSSSSSEPKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNSANVDLNGQPASIDYDEDDDEEDEDDQGARDSSPEDA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00708 561 Pfam CCT motif 480 522 IPR010402 GO:0005515
Lapu9g00708 561 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Lapu9g00708 561 MobiDBLite consensus disorder prediction 179 201 - -
Lapu9g00708 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 312 IPR045279 GO:0009736
Lapu9g00708 561 MobiDBLite consensus disorder prediction 311 356 - -
Lapu9g00708 561 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Lapu9g00708 561 MobiDBLite consensus disorder prediction 536 561 - -
Lapu9g00708 561 MobiDBLite consensus disorder prediction 311 346 - -
Lapu9g00708 561 SMART REC_2 31 146 IPR001789 GO:0000160
Lapu9g00708 561 Gene3D - 31 244 - -
Lapu9g00708 561 ProSiteProfiles CCT domain profile. 480 522 IPR010402 GO:0005515
Lapu9g00708 561 MobiDBLite consensus disorder prediction 525 561 - -
Lapu9g00708 561 MobiDBLite consensus disorder prediction 455 472 - -
Lapu9g00708 561 SUPERFAMILY CheY-like 27 157 IPR011006 -
Lapu9g00708 561 MobiDBLite consensus disorder prediction 455 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00708 Lapu-Chr9 8893365 8898783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00708 20 560 Response Regulator Gene Family AT5G61380 50.079 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lapu9g00708 Response_reg 1.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00708 K12127 - gmx:100799728 949.888