Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00703 ATGGGAAGGACTCCTTGCTGCAGTCACGAGGAACTCAGAAAAGGTGCATGGACTGTTCAAGAAGACCAGAAACTCATTGCTTACATTCAGAAACATGGCACTGGAAGCTGGCGTACCTTGCCTCAGAAAGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTCAGACCAGACATTAAGAGAGGAAAATTGAGCCCAGAAGAAGAGCAGAAAATTATACAACTTCAGGCGGTTCTTGGCAACAGGTGGTCAAGTATTGCAAAGCATTTACCAATGCGAACTGATAACGAAATCAAGAACTATTGGAACTCATATCTGAAAAGGCACTACGAAAAGAATGATGTGGATCCATCGAGTTCAAAACCAATCAGCACTGCTAGTTCCACAGAATCAAAATCCAGTGACTTGTGCATGGTTCCATCAAAGGAAACTGATAGTCATGGACCAAATGCCACTACACACCAATCTCATCAGCACAGCTTACCAAAGTCAATGTCATCTTCAACTCAGCTTCTCAACAGAGTTGCTAGTAAAATTCTTGCATCTGGGTACCTTGAAGCAATTAAATCATTTCAACCTGCTGTTGCTGGGAACAGCAACAGTGGAAGTGTGGTTAAAACTGGAATTGGAGAAGAAAAGGACGATATTAGAGACCCTAATTTGCCTAATTTGACCTCATCAACAAATCAGTCAGTAACTTCAGCTCAGCTACTGAACAAGATGGCTACTTCACTTCCTCATAAAGTTCATGGACTTGAATCTGCAAAAGCTGTTTTCTCAAAATTGCTGGAAAGTAGTGAAAAAGGTGACTCTGCCAGTGATGGTAGCTTTATTAGCAGTGATGAAATTGGAGATTGTTTGAATGCTCTAAGCCCTTTTGAGGATGGACCACAGATAGCAAAAATGGTTGGGTCTCCTTCTAGTCCTTCACTAATATTCAATCAAGTGACCACACCCTCATGCTTTTCAGACAATGAAGATAATTGGCAATGCGTTTCATCAAACTATGTTTCCTTCAGACATTGTGCTCCAAGTGGGGGGGGTGACTGCAGTGTGTCTGAACTCAACTTGGGTGAGTCTTCCAGTTCAACATCGTGCTTCCTGTTTGAGAATGCTGATCTTGGAACGTGTGATGATGAAATAAGCAAGTACATTCAGTATTTGTAA 1185 0.4194 MGRTPCCSHEELRKGAWTVQEDQKLIAYIQKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSPEEEQKIIQLQAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKRHYEKNDVDPSSSKPISTASSTESKSSDLCMVPSKETDSHGPNATTHQSHQHSLPKSMSSSTQLLNRVASKILASGYLEAIKSFQPAVAGNSNSGSVVKTGIGEEKDDIRDPNLPNLTSSTNQSVTSAQLLNKMATSLPHKVHGLESAKAVFSKLLESSEKGDSASDGSFISSDEIGDCLNALSPFEDGPQIAKMVGSPSSPSLIFNQVTTPSCFSDNEDNWQCVSSNYVSFRHCAPSGGGDCSVSELNLGESSSSTSCFLFENADLGTCDDEISKYIQYL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00703 394 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu9g00703 394 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu9g00703 394 MobiDBLite consensus disorder prediction 123 172 - -
Lapu9g00703 394 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lapu9g00703 394 Gene3D - 14 66 - -
Lapu9g00703 394 CDD SANT 16 61 IPR001005 -
Lapu9g00703 394 SMART sant 66 114 IPR001005 -
Lapu9g00703 394 SMART sant 13 63 IPR001005 -
Lapu9g00703 394 Gene3D - 69 142 - -
Lapu9g00703 394 FunFam MYB-related transcription factor 13 66 - -
Lapu9g00703 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu9g00703 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Lapu9g00703 394 CDD SANT 71 112 IPR001005 -
Lapu9g00703 394 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu9g00703 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu9g00703 394 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu9g00703 394 MobiDBLite consensus disorder prediction 119 172 - -
Lapu9g00703 394 FunFam MYB transcription factor 69 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00703 Lapu-Chr9 8810868 8813376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00703 1 128 MYB Transcription Factor Family AT5G15310 69.531 9.29e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g00703 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00703 K09422 - gmx:100818639 633.254