Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu9g00678 | ATGGGGTCGGAGACTTCTGTCCCTGTTGTTGATAAGGTCAACAAGTCTCAAGATATATCAAGAAAGAGGTCTTGTTCCAGTAAACAGAGTCAAGGAAAAGTCCCCAAGAGAATTCGCAAGGCTGAAAGAGAGAGAGAGAAGCGTGAACAGTTAAATGAACTCTTTCTTGGTCTTGCTGATACACTTGATCTTAGAGAACAGAGCAATGGAAAAGCTTCTATATTGAGGGAAGCCACCAGATTGCTAAAAGACTTGGTCAGTCAGATCGAGTCCTTGAAAAAGGATAGTGCATCTCTGTTGTCTGAGACTCACTATGTGACTATGGAGAAAAATGAGATGGTGGAGGAGAATTGTGTTCTGAAAACTCAGATTGAGAAACTTGAAGGTGAGATAAAAGCAAGAGTAGGCCAATGTAGACCTAACCTGATCAGTGTACCTTCTCACTTGGAATTTCCACAACCAGAAAAGATTACAAAGTTTCCAGGGGAGAGTCTCCAATTGTCTACCAAAGAACCTAAAGTGCAGCAAGGACATGCAGTTTTGGTTGTCCCCTTGAGTAATCATCATGGCCAAGGTGCTTTATCAGCACATAATGTTGCTGAGCAGACCCCAAAACCCACATCCACTATCAGTAAACCACATGCCAGGTATCCCACCCCAATGGACTCATGGCCACTACACTTGCTTGCACAGCAACCAACTTCAAATTAA | 711 | 0.4304 | MGSETSVPVVDKVNKSQDISRKRSCSSKQSQGKVPKRIRKAEREREKREQLNELFLGLADTLDLREQSNGKASILREATRLLKDLVSQIESLKKDSASLLSETHYVTMEKNEMVEENCVLKTQIEKLEGEIKARVGQCRPNLISVPSHLEFPQPEKITKFPGESLQLSTKEPKVQQGHAVLVVPLSNHHGQGALSAHNVAEQTPKPTSTISKPHARYPTPMDSWPLHLLAQQPTSN* | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu9g00678 | 236 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Lapu9g00678 | 236 | MobiDBLite | consensus disorder prediction | 198 | 214 | - | - | |
| Lapu9g00678 | 236 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 35 | 85 | IPR011598 | GO:0046983 | |
| Lapu9g00678 | 236 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 33 | 99 | IPR036638 | GO:0046983 | |
| Lapu9g00678 | 236 | MobiDBLite | consensus disorder prediction | 198 | 236 | - | - | |
| Lapu9g00678 | 236 | Gene3D | - | 32 | 110 | IPR036638 | GO:0046983 | |
| Lapu9g00678 | 236 | PANTHER | TRANSCRIPTION FACTOR BHLH47 | 1 | 235 | - | - | |
| Lapu9g00678 | 236 | Coils | Coil | 75 | 102 | - | - | |
| Lapu9g00678 | 236 | Pfam | Helix-loop-helix DNA-binding domain | 36 | 85 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu9g00678 | Lapu-Chr9 | 8226191 | 8228521 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu9g00678 | 31 | 232 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G47640 | 47.032 | 1.24e-51 | 166 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu9g00678 | - | - | gmx:100809240 | 248.44 |