Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00661 ATGGAATGTAGCAAGTTCAGTTTGCTCTTGTTTTACGTAATTTTTCTTGCTATACTCCCCACCCTTAAGGCTAATAACATAGGTCACTTCGACCATGTCTGGCATAGGCGATTAAAGGAGGCAAGAGAAGCTGCAAAAAAGGCTTACAAGCCAAACCCCATGAAAGTTACCGCTGAATTCAATACACACGTCATCAGAGCGATGAAAGGCTCCAACAGCACGAGAAGGGGCTTGAAGACAAACGATGGTCAATGCGTGGCGTCAAATCCCATTGACAAATGTTGGAGATGTGACAAAAATTGGGAGAAAAACCGCAAGAAGCTAGCAGATTGCGCAATTGGGTTTGGCCATGGCACAACCGGGGGAAAAGATGGGAAAATCTACGTGGTAACCGACGCTTCCGACAATGACCTTGTGAACCCTAAACCAGGGACATTGAGACATGCAGCTATTCAGACAGAGCCACTGTGGATCACTTTTGCGCGAAGCATGATCATTAAGCTTAATGCAGAGCTTCTTCTAACAGATAACAAGACGATCGATGCACGTGGTGCCAATGTGCACATTCAAGAGGGTGCCCAAATAACGATGCAATATGTGAAAAATATTATCATTCACGGACTGCACATCCACGACATTAAGAAAAAAAGTGGTGGCCTTATAAGAGACTCCATGAGCCACTATGGAGTCCGCGCCATGAGTGATGGCGACGGGCTTTCACTCTTTGGATCCTCAAATGTTTGGATTGATCATGTTTCCATGACCAATTGCGATGATGGCCTCATCGATGTCGTTAGTGCATCAACAGCTGTTACCATCTCCAACTGCCATTTTGTCAAACACAACGACGTTTTGTTATTCGGCGCCACTAATAGCTTCTCAGGAGATAAAATCATGCAAGTGACGTTGGCTTTCAACCATTTCGGGAAAGGATTGGTTCAGAGAATGCCAAGGTGCAGATGGGGCTTTTTTCACATTGTTAACAACGACTACACTCATTGGCTAATGTACGCCGTAGGTGGAAGCCAGCAACCCACCATCATCAGCCAGGGAAACCGTTTTGTCGCCCCGGACGACAGAAATGCAAAAGAAGTGACAAAACGGGACTACGCGTCTGAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGTGATTTATTCGTTAATGGAGCCTTCTTTGTTGAGTCTGGGAAAAAAGTTACAAAATTTCCCAAGACAGACATCAGAGCAGAGCCTGGGAAATCCGTAGCTACTCTCACTAAAGATGCAGGTCCTATAAAATGTATTGTAAACAAGCCTTGCTGA 1308 0.4511 MECSKFSLLLFYVIFLAILPTLKANNIGHFDHVWHRRLKEAREAAKKAYKPNPMKVTAEFNTHVIRAMKGSNSTRRGLKTNDGQCVASNPIDKCWRCDKNWEKNRKKLADCAIGFGHGTTGGKDGKIYVVTDASDNDLVNPKPGTLRHAAIQTEPLWITFARSMIIKLNAELLLTDNKTIDARGANVHIQEGAQITMQYVKNIIIHGLHIHDIKKKSGGLIRDSMSHYGVRAMSDGDGLSLFGSSNVWIDHVSMTNCDDGLIDVVSASTAVTISNCHFVKHNDVLLFGATNSFSGDKIMQVTLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQQPTIISQGNRFVAPDDRNAKEVTKRDYASESEWKNWNWRSEGDLFVNGAFFVESGKKVTKFPKTDIRAEPGKSVATLTKDAGPIKCIVNKPC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00661 435 Gene3D - 88 428 IPR012334 -
Lapu9g00661 435 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Lapu9g00661 435 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Lapu9g00661 435 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Lapu9g00661 435 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Lapu9g00661 435 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Lapu9g00661 435 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Lapu9g00661 435 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Lapu9g00661 435 SMART amb_all 163 360 IPR002022 -
Lapu9g00661 435 SUPERFAMILY Pectin lyase-like 89 425 IPR011050 -
Lapu9g00661 435 Pfam Pectate lyase 178 354 IPR002022 -
Lapu9g00661 435 Pfam Pectate lyase, N terminus 26 78 IPR007524 GO:0030570
Lapu9g00661 435 PANTHER PECTATE LYASE 18-RELATED 41 433 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00661 Lapu-Chr9 7861614 7863457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00661 8 435 Polysaccharide Lyase AT1G14420 56.473 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00661 K01728 - gmx:100801864 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01369 1 26465789 26467398 Lapu9g00661 9 7861614 7863457 ECH
Lapu9g00661 9 7861614 7863457 Lapu9g00661 9 7861614 7863457 ECH