Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00657 ATGGCGGGTGGGACTGGTTTTTCCGCTGCTTCAAATTTAACAACACCTCCTTCCACCTCTCAGCCTCTTGATTCTCTTTTCCGTTCTTCTTCTTCTTCTTCCCCTTTTCTCGGTTCAAGATCTATAGTGAGCTTTGGAGATGTTCAAGGGGGGAAGGGGTGCAACGAGTCGTTCTTCCTGCCTTATGATGAGAATGGGGATGAGGACATGGACGAGTACTTTCATCAGCCTGAGAAAAAACGCAGGCTTTCGGTGGATCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAAGCTCGAACCCGAGAGGAAGATTCGGCTAGCTAAAGAACTCGGGTTGCAGCCGCGGCAGGTGGCGATTTGGTTTCAGAACCGCCGGGCGCGGTGGAAGACCAAGCGGATGGAGAAGGATTATGATTCCCTGCAGGCTTGCTATAATGATCTCAAAGCACACTATGATGATCTTCTCATGGAGAAGGATAAACTCAAAGCTGAGGTAGCAAGGCTCAGTGAGAAGGTGGTTGGAAGAGAGAAACTGGAGGAGGGGAACTTTGAACAGGCTCAAACCAAGGGATCAGAGGAGCCGCTGCAGAAGTCTATAATTGATTCAGCTTCTGAGGGTGAAGGGTCTAAAGTGTCCATCGGGGCTTGTAAACAGGAAGACATTTGTTCAGGCAAGAGTGACATGTTTGATTCATCAGAAAGCCCACATTACACTGGTGGAGTGCACTCTGCTGCTCTTGAGACTGGTGACTCTTCTTATGTGTTTGAACCTGATCAGTCTGATGTGTCTCAGGATGAAGTAGATAACCTGAGCAAAACCCTTTTGCCTCATTATATGTTTCCCAAACTTGAAGATGTTGGTTACTCCGACCCGCCTCATAGCTCATGTCATTTTGAAATTCCGGAGGAAGATCAAGCCATTTGGTCTTGGTCTTACTGA 948 0.4747 MAGGTGFSAASNLTTPPSTSQPLDSLFRSSSSSSPFLGSRSIVSFGDVQGGKGCNESFFLPYDENGDEDMDEYFHQPEKKRRLSVDQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKRMEKDYDSLQACYNDLKAHYDDLLMEKDKLKAEVARLSEKVVGREKLEEGNFEQAQTKGSEEPLQKSIIDSASEGEGSKVSIGACKQEDICSGKSDMFDSSESPHYTGGVHSAALETGDSSYVFEPDQSDVSQDEVDNLSKTLLPHYMFPKLEDVGYSDPPHSSCHFEIPEEDQAIWSWSY* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00657 315 SMART HOX_1 77 138 IPR001356 GO:0003677
Lapu9g00657 315 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Lapu9g00657 315 Pfam Homeobox associated leucine zipper 134 175 IPR003106 GO:0006355|GO:0043565
Lapu9g00657 315 CDD homeodomain 79 135 IPR001356 GO:0003677
Lapu9g00657 315 MobiDBLite consensus disorder prediction 7 36 - -
Lapu9g00657 315 Coils Coil 147 174 - -
Lapu9g00657 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 226 IPR045224 GO:0003700
Lapu9g00657 315 MobiDBLite consensus disorder prediction 1 36 - -
Lapu9g00657 315 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Lapu9g00657 315 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Lapu9g00657 315 SUPERFAMILY Homeodomain-like 65 134 IPR009057 -
Lapu9g00657 315 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Lapu9g00657 315 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Lapu9g00657 315 FunFam homeobox-leucine zipper protein ATHB-6-like 82 128 - -
Lapu9g00657 315 Gene3D - 73 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00657 Lapu-Chr9 7821543 7823801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00657 77 223 Homeobox Transcription Factor Family AT3G01470 49.660 1.82e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu9g00657 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00657 - - gmx:732618 509.605