Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00646 ATGGTGAGGTCTCCTTGTGAAAAGGTGAATGTCAAAAGGGGTGCGTGGACCACAGAAGAAGATACAAAGAAGCTTGCATTTGGCTCCAAGCATGGATCTGGTAACTGGACTTCTGTCCCCAAAAAAACAAGGCTCAAGAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACTAACTGCCTCAGGCCTGATCTTAAGCACGACAATTTCACAACCCAAGAAGAAGATCTTATCGTTAAGCTTCACGCAGCCATCGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGGAGAACAGACAACGATGTAAAGATCTACTGGAACACAAAGCTGAAAAAGAAACTCTCTCAAATGGGGATCGATCCTGTTACTCACAAGCCCTTTTCTAAACTCATTGCTGACTATGGAAACATTGGGGGTTGCCAGAAACCAAGTGCCCGAATAGGGTCTATCAATAAAGACTTCAAGAGTGCAATGATAACTCATGGTGATAACCTCTCAAAGGATCTTGCTCAGTTCCAAGCCATACCAATGGTGTCACCACGTGCCTCAAATTGCATAGACTTTGAGAATGAGATCATCCCAGGATCTGTTTTTGGGGAAGATCGTTTGTCAAAAACTTCATCACCATCTACTCCTTCTATTTGTTCCTCTTCAGCTTTTAGTTGGAATGACTTCCTTCTAGAAGATGCTTTTACACCACTTGATTACCAGGAAAAAGACATCATGGTTTCGACCGACTTGGTGAGCCAAATAGAGAACCTCAGGTAG 771 0.4384 MVRSPCEKVNVKRGAWTTEEDTKKLAFGSKHGSGNWTSVPKKTRLKRCGKSCRLRWTNCLRPDLKHDNFTTQEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKIYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGCQKPSARIGSINKDFKSAMITHGDNLSKDLAQFQAIPMVSPRASNCIDFENEIIPGSVFGEDRLSKTSSPSTPSICSSSAFSWNDFLLEDAFTPLDYQEKDIMVSTDLVSQIENLR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00646 256 FunFam Os07g0634900 protein 68 127 - -
Lapu9g00646 256 Gene3D - 67 129 - -
Lapu9g00646 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lapu9g00646 256 FunFam Transcription factor RAX3 6 66 - -
Lapu9g00646 256 CDD SANT 68 111 IPR001005 -
Lapu9g00646 256 Gene3D - 6 66 - -
Lapu9g00646 256 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lapu9g00646 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lapu9g00646 256 CDD SANT 15 58 IPR001005 -
Lapu9g00646 256 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lapu9g00646 256 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lapu9g00646 256 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lapu9g00646 256 Pfam Myb-like DNA-binding domain 68 109 IPR001005 -
Lapu9g00646 256 SMART sant 65 113 IPR001005 -
Lapu9g00646 256 SMART sant 12 62 IPR001005 -
Lapu9g00646 256 PANTHER F14D16.11-RELATED 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00646 Lapu-Chr9 7640189 7641597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00646 1 230 MYB Transcription Factor Family AT3G28470 48.163 1.42e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g00646 Myb_DNA-binding 4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00646 K09422 - gmx:100795381 388.267