Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00644 ATGGATCCTCCTCTCATCACTGACTCCACATTCTCCCCCGCTTCCACCCTCGCTGATATTTGGCTCCCAACCCCCGCTTTTCCCCACGCCGACCACCACTTCTCCAAGAATGATTCTGGTCGTTGTAAACGGATGAAGGTGGGAGGGTCCAGCTTTGAAAATGATGGTTTCAAAGCTGAAGCAGAAACTAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCTCTATACCTTGTGAGGAGGCTCCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCTACGGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAAATCAGCGAGAGAATGAAAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACGTCCAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAACCCTAACATAGACGGGTTGCCTTTAAAAGATGTTGGTGGTACTCCCCGATTCGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGGGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATAGGTGGTGGTTTGAGAGAACAACATAATTCAGAGAAGTCTCACTGGGAATGA 687 0.4629 MDPPLITDSTFSPASTLADIWLPTPAFPHADHHFSKNDSGRCKRMKVGGSSFENDGFKAEAETSSVSGNKSSEQSSIPCEEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYVQSLQRQVEFLSMKLEAVNSRMNMNPNIDGLPLKDVGGTPRFDIAGMVFGSQAARGYAQGSHPGWLHMQIGGGLREQHNSEKSHWE* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00644 228 Pfam Helix-loop-helix DNA-binding domain 100 147 IPR011598 GO:0046983
Lapu9g00644 228 Coils Coil 143 163 - -
Lapu9g00644 228 MobiDBLite consensus disorder prediction 53 83 - -
Lapu9g00644 228 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 201 IPR024097 GO:0006355
Lapu9g00644 228 FunFam Basic helix-loop-helix transcription factor 93 166 - -
Lapu9g00644 228 CDD bHLH_AtBPE_like 86 171 - -
Lapu9g00644 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 146 IPR011598 GO:0046983
Lapu9g00644 228 SMART finulus 102 152 IPR011598 GO:0046983
Lapu9g00644 228 MobiDBLite consensus disorder prediction 57 79 - -
Lapu9g00644 228 Gene3D - 93 171 IPR036638 GO:0046983
Lapu9g00644 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 166 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00644 Lapu-Chr9 7618334 7623101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00644 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 43.463 3.49e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu9g00644 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00644 - - vra:106758689 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00644 9 7618334 7623101 Lapu9g00644 9 7618334 7623101 ECH