Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00641 ATGCCTCTCTCCTCCGCCTCCGCCGCCCCTCACTCCGCCGAGATCATGCTGTTTGGAGTCAGACTTGTCGTTGACTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCCCAGTACGATCACCCTCGCGATACCGCCGCCGCCAAAGAGGACGCTCTCGCCGCTGGCTACGCCTCCGCCGACGACGCCACTCCGATCAACTACGGAAAAAACCGCGATCGCAAGCGAGGGATTCCATGGACAGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGGACACCAACTCAAGTTGCTAGCCATGCTCAAAAATACTTTCTCCGCCGTACCAATCTTAATCGCCGTCGCCGTAGATCCAGCCTCTTTGATATCACCACCGATTCGAGGGTAGCTTTTCTTGTCTCTACAACCCCGATGGAGGAAGGACAGATCCAGCATCAAGATAACGTGTCTCTTGTGCATCCCATGTACCCTGTTACCCCTGAGGGAAGCAACATGAACGGATTTTCAATGATGCCTTTGTATTCGAAGGATATTGGTTCTGGAGTTATGTCAGTTCAAGCTGGGAATCCAATGGAAATACTTACTTTGGGACAAGGAAATGTGGAACAGAATGGGCCTAGTACTAAGCTAGTTTGTACAGCCCCTATTGTTCCAGATCATAAAGGCTCCACAGTGTCTGATGTCACTGCCAGTCTAAGTTCAGTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACATCATCAATACATTCAGCTTTTCATGCACTGTCGTGTTTCAACAATGGAGATAGCGTCATAAGCGTTGCTTAG 888 0.4966 MPLSSASAAPHSAEIMLFGVRLVVDSMRKSVSMNNLSQYDHPRDTAAAKEDALAAGYASADDATPINYGKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSRVAFLVSTTPMEEGQIQHQDNVSLVHPMYPVTPEGSNMNGFSMMPLYSKDIGSGVMSVQAGNPMEILTLGQGNVEQNGPSTKLVCTAPIVPDHKGSTVSDVTASLSSVDPPTLSLGLSLSSSQRQTSSIHSAFHALSCFNNGDSVISVA* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00641 295 ProSiteProfiles SANT domain profile. 80 128 IPR017884 -
Lapu9g00641 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 126 IPR006447 GO:0003677
Lapu9g00641 295 SMART sant 76 126 IPR001005 -
Lapu9g00641 295 Gene3D - 78 130 - -
Lapu9g00641 295 ProSiteProfiles Myb-like domain profile. 72 124 IPR001005 -
Lapu9g00641 295 SUPERFAMILY Homeodomain-like 74 128 IPR009057 -
Lapu9g00641 295 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
Lapu9g00641 295 FunFam transcription factor MYB1R1 78 129 - -
Lapu9g00641 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 128 IPR017930 -
Lapu9g00641 295 CDD SANT 79 124 IPR001005 -
Lapu9g00641 295 PANTHER TRANSCRIPTION FACTOR KUA1 12 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00641 Lapu-Chr9 7600194 7603862 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu9g00641 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00641 - - gmx:778057 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00641 9 7600194 7603862 Lapu9g00641 9 7600194 7603862 ECH
Lapu3g01078 3 11565671 11567992 Lapu9g00641 9 7600194 7603862 PCT