Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00634 ATGTCTACCTCCTCAACGCACCACACCTATAGCCGAAAGCAGAAATCCCTCGGCTTATTGTGCACCAATTTTCTCAGGCTATACAACAGAGAAGGCGTTCGCTTAATTGGTCTTGATGATGCCGCCTCGCGATTAGGAGTTGAAAGGCGCCGGATCTACGACATCGTCAACGTCCTAGAGAGCGTTGGGGTGCTGGCTAGAAAAGCTAAGAATCAGTATACCTGGAAGGGATTTTCTGCAATTCCCGAGGCTTTGCAAGAACTCAAGGAAGATGGTTTGAAAGAGAATCCCGGGTCTTTTGATGACTCCAATGACAGTGCCAAAGCGTCTGATGATGAGGATGAGGAGGAAACTTCTCCCAATGACAATACTGAAAGTCAGAATGACAAGGAAATTCCTGATTCCACCGCTCTTGTCCTATCCTCTAAGAATGAAAACAGAAGGGAAAAGTCTCTGGCATTGCTTACTCAGAACTTTGTCAAGCTTTTTATCTGCTCTAGTATTGAAATGATCTCCCTTGACGACGCTGCGAAGTTGTTGCTAGGAAATGCTAATACATCAATAATGAGGACAAAAGTCAGACGCCTATATGATATTGCAAATGTGTTATCCTCTATGAATCTAATCGAGAAGACCCATACAACAAACACAAGAAAACCAGCATTTAGGTGGTTGGGTTGGAGAGGGAAAGCATGGATTGAATCAGTTGACTTAGCTAACAATTCAAATGTCAGCGAGCCAGGGAAAAGGAAGTTTGGAGCTGACATCACAAACACAAGTTTTAAAAGGAGCAAAACTGATTTGCTTTTGGATGGCCAGAGCTGTAAAATGCAAAAGCAACATGAAAATATTAGTTACCGAGCACAGCCTGAGAAAAGCAACTTAGAAAAAGATGCAAAACAGACTTCAAAGGGCTATCAGTTTGGCCCTTTTGCTCCAGCTTATGTGTCCAAAGTCGGAACCTCTGAAAATAATAGCGGGACTCAGATGCATGACTGGGACAGCCTTGCACAGGTTCATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGACCTATTCTCTCACTACATGGATGCATGGAAATCATGGTACTCTGAAGTTGCTGAGAAAAAGCCAACGAAAACTTCATAA 1131 0.4324 MSTSSTHHTYSRKQKSLGLLCTNFLRLYNREGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKASDDEDEEETSPNDNTESQNDKEIPDSTALVLSSKNENRREKSLALLTQNFVKLFICSSIEMISLDDAAKLLLGNANTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWIESVDLANNSNVSEPGKRKFGADITNTSFKRSKTDLLLDGQSCKMQKQHENISYRAQPEKSNLEKDAKQTSKGYQFGPFAPAYVSKVGTSENNSGTQMHDWDSLAQVHRPQYQNQALRDLFSHYMDAWKSWYSEVAEKKPTKTS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00634 376 MobiDBLite consensus disorder prediction 93 135 - -
Lapu9g00634 376 FunFam E2F transcription factor-like E2FE 142 228 - -
Lapu9g00634 376 MobiDBLite consensus disorder prediction 107 122 - -
Lapu9g00634 376 FunFam E2F transcription factor 8 7 79 - -
Lapu9g00634 376 Gene3D - 141 228 IPR036388 -
Lapu9g00634 376 Gene3D - 7 79 IPR036388 -
Lapu9g00634 376 SMART E2F_TDP_2 147 226 IPR003316 GO:0005667|GO:0006355
Lapu9g00634 376 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Lapu9g00634 376 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Lapu9g00634 376 SUPERFAMILY "Winged helix" DNA-binding domain 149 227 IPR036390 -
Lapu9g00634 376 PANTHER TRANSCRIPTION FACTOR E2F 5 345 IPR015633 GO:0000978|GO:0006357
Lapu9g00634 376 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Lapu9g00634 376 Pfam E2F/DP family winged-helix DNA-binding domain 149 226 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00634 Lapu-Chr9 7479969 7486781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00634 7 372 E2F-DP Transcription Factor Family AT3G48160 57.143 1.44e-131 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lapu9g00634 E2F_TDP 2.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00634 K09391 - gmx:100818090 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00634 9 7479969 7486781 Lapu9g00634 9 7479969 7486781 ECH
Lapu3g01085 3 11661274 11664306 Lapu9g00634 9 7479969 7486781 PCT