Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00588 ATGGGTTTGGGGCTTTTCAGTTCTTTTCTAGTTCTGACACTCTTCTTCAAGCACTTAGCATCCCAGCAACCAAACACTGATGATTTCCTTGTGTCTGAGTTCTTGAAGAAGATGGGCTTAGCATCCTCCCGGGTCTACAACTTTTCTGCTTCTGTTTGTTCATGGCAAGGTGTTTCATGTGATGCCAAGAGAGAACATGTTATTGGGTTAGTCTTTTCTGGCATGGACCTTTCTGGTCCTATTCCAGACACCACCATAGGCAAGCTCACCAAGCTCCGATCATTGGACCTTAGCCACAACAAAATCACCGACTTGCCTTCTGATTTCTGGAGTTTTAGCATGCTCAAGAACCTTAACCTCTCCTGCAATCAAATTTCTGGTTCATTGAGTAACAACATAGGAAACTTTGGTTTGCTAGAAGTATTGGACTTGTCCAGCAACAATTTTTCAGGGGAAATTCCTGAAGCTATTAGTTCCCTCGTGAGTCTGAAAGTCATCAAACTTGACCACAACAGGTTTGAGCAAAGAATACCTTCTGGGATCCTTAAGTGTCATTCTCTTGTTTCAATTGATCTTTCTTCAAATCAGCTAAGTGGGAAAGTTCCAGATGATTTTGGTGCTGCTTTTCCTAATCTCATTACCTTGAACCTTGCTGGGAATAGTATTAATGGTAGTGATTCTGATATTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCTGGAAATTCCTTTCAGGGTTCTGTGATGAAGTTATTTCAAGGAAGGCTTGAGGTCATAGATCTTAGAAGAAACCAATTTGAAGGTCGCATTTCTCAGGTACATTCCATCTCTAATTACAATTGGTCTCATTTAGTTTACGTGGATTTGTCTGAGAATCAGCTGGATGGGGAGATTTCCCAAAATTTGATGGAATCCAAGAATCTAAAGCACATTAATCTTGCCCACAATAGATTTAGCAGACAGAAATTTCCCAAGATTGAAATGCTATCAGGATTGGAATATCTGAACTTGTCCAAAACTAATCTCACTGGTTACATTCCTGCTGAAATCTCACAACTTCGTAATTTGAGTGCACTTGATGTTTCTATGAATCATCTTATAGGGAAAATCCCTTTACTAAACAATAAAAACCTCCGAGTTCTTGACCTTTCAAACAACAATCTGAGTGGACATGTCCCATCATCAGTCATAGCGAAACTTCCTTTAATGGAGAAATATAACTTCTCTTATAATAACTTAACCTTCTGTGCTTTGGAAACCAAATCAGCTATCATCCAAAGAGCATTCTATGGATCACTGAACAGTTGCCCTATTGCTGCAAACCCAAGTCTTCTAAAAAGAAGAGCCACTGAAAGTAAGGGAATGAAGCTAGCTCTAGCATTGACCTTCTCAATGATCTGCTTGATTGCTGGGCTTTTGCTTCTAGCTTTTGGTTGCCTCAAGAAAACAAAACCATGGCCTGTTAAACAAACTTCGTACAAAGAAGAACAAGACATCTCAGGTCCCTTTTCATTTCACACTGATTCGACCACTTGGGTGGCTGATGTTAAGCAAGCAACATCCGTCCCAGTAGCAATCTTTGACAAGCCACTGTTAAATATCACGTTTGCAGACCTTCTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCCGAAGGGAAATTTGGGCCTGTTTATAGAGGATTTCTACCAGGTGGTATTCATGTAGCAGTTAAAGTACTGGTGGTTGGATCCACTCTTACAGATAAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGAAGAATAAAGCATCCCAATCTTGTTCCTCTAACAGGATATTGTATAGCTGGGGATCAGAGGATTGCTATATATGACTACATGGAGAATGGGAACTTACAAAATTTGCTTTATGACTTGCCACTTGGTGTACTTCAAAGTACAGATGATTGGAGCACAGATACATGGGAAGAAAATGACAGTAATGGGATTCAAAATGCTGGATCAGAAGGAGGGCTCACAACTTGGAGATTTCGCCATAAAATCGCACTCGGCACAGCCCGAGCATTGGCATTTCTGCATCATGGATGCTCACCACCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTATATTTGGATTATAACTTGGAGCCAAGACTGTCAGATTTTGGGCTGGCTAAGATTTTTGGGAATGGCTTGGATGAGGAGATTGCACTTTGTTCACCTGGTTATGTTCCACCTGAGTTTTCTGAACCAGAAGTTTACACCTCAACTCCAAAATCAGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTATCTGGGAAGAAGCCAGTTGGAGATCATTATCCTGATGTGAAAGAAGCAACTTTGGTTAGTTGGGTGAGAGGACTAGTGAGAGAGAACAAAGCTTTAAGAGCCATTGATCCAAAAATTCATTATACAGGACCAGAAGAGCAAATGGAGGAGGCCCTTAAGATTGGTTATCTGTGCACAGCTGATCTTCCTTCCAAGCGACCGAGCATGCAGCAGATTGTTGGACTTCTTAAAGATATTGAACCTCCTCCTAGTTAG 2565 0.4101 MGLGLFSSFLVLTLFFKHLASQQPNTDDFLVSEFLKKMGLASSRVYNFSASVCSWQGVSCDAKREHVIGLVFSGMDLSGPIPDTTIGKLTKLRSLDLSHNKITDLPSDFWSFSMLKNLNLSCNQISGSLSNNIGNFGLLEVLDLSSNNFSGEIPEAISSLVSLKVIKLDHNRFEQRIPSGILKCHSLVSIDLSSNQLSGKVPDDFGAAFPNLITLNLAGNSINGSDSDISGLKSIVSLNISGNSFQGSVMKLFQGRLEVIDLRRNQFEGRISQVHSISNYNWSHLVYVDLSENQLDGEISQNLMESKNLKHINLAHNRFSRQKFPKIEMLSGLEYLNLSKTNLTGYIPAEISQLRNLSALDVSMNHLIGKIPLLNNKNLRVLDLSNNNLSGHVPSSVIAKLPLMEKYNFSYNNLTFCALETKSAIIQRAFYGSLNSCPIAANPSLLKRRATESKGMKLALALTFSMICLIAGLLLLAFGCLKKTKPWPVKQTSYKEEQDISGPFSFHTDSTTWVADVKQATSVPVAIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCIAGDQRIAIYDYMENGNLQNLLYDLPLGVLQSTDDWSTDTWEENDSNGIQNAGSEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGNGLDEEIALCSPGYVPPEFSEPEVYTSTPKSDVYCFGVVLFELLSGKKPVGDHYPDVKEATLVSWVRGLVRENKALRAIDPKIHYTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPPPS* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00588 854 SUPERFAMILY Protein kinase-like (PK-like) 532 849 IPR011009 -
Lapu9g00588 854 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Lapu9g00588 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Lapu9g00588 854 Pfam Protein tyrosine and serine/threonine kinase 551 844 IPR001245 GO:0004672|GO:0006468
Lapu9g00588 854 SUPERFAMILY L domain-like 43 418 - -
Lapu9g00588 854 Gene3D Ribonuclease Inhibitor 327 437 IPR032675 -
Lapu9g00588 854 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Lapu9g00588 854 FunFam Nuclear pore complex protein NUP107 31 178 - -
Lapu9g00588 854 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Lapu9g00588 854 Pfam Leucine Rich Repeat 378 396 IPR001611 GO:0005515
Lapu9g00588 854 Gene3D Ribonuclease Inhibitor 178 251 IPR032675 -
Lapu9g00588 854 SMART LRR_typ_2 89 111 IPR003591 -
Lapu9g00588 854 SMART LRR_typ_2 330 354 IPR003591 -
Lapu9g00588 854 SMART LRR_typ_2 209 232 IPR003591 -
Lapu9g00588 854 SMART LRR_typ_2 377 400 IPR003591 -
Lapu9g00588 854 SMART LRR_typ_2 160 184 IPR003591 -
Lapu9g00588 854 SMART LRR_typ_2 136 159 IPR003591 -
Lapu9g00588 854 Gene3D Ribonuclease Inhibitor 252 326 IPR032675 -
Lapu9g00588 854 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Lapu9g00588 854 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Lapu9g00588 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Lapu9g00588 854 PRINTS Leucine-rich repeat signature 354 367 - -
Lapu9g00588 854 PRINTS Leucine-rich repeat signature 92 105 - -
Lapu9g00588 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Lapu9g00588 854 Gene3D Transferase(Phosphotransferase) domain 1 623 852 - -
Lapu9g00588 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 281 849 - -
Lapu9g00588 854 ProSiteProfiles Protein kinase domain profile. 547 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00588 Lapu-Chr9 6765980 6769039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00588 77 849 Receptor kinase-like Gene Family AT5G07280 31.671 1.18e-110 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lapu9g00588 PK_Tyr_Ser-Thr 2.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00588 - - gmx:100807051 1499.18