Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00559 ATGGCTTCTTCTTCTCCTCTTTACCAGCCAACCCACACCATTTTCTCCAACACCCAGTTCAAGGGCTTGCGCAGTGGCTTCTTCTGGCGACCCACTTACTCCTTTGGCACTCTTGCTGAAAATAAAGCTCGACCCATCAAAACTTCGGTTGCTAAATCCCCATTTCCCCTGTTTCTGCCTCCCCAAGTTGAAGAAGAGTCACCTTCTGAGTTGGAGCCTGTGGATCCTGACTTCTACAAGATTGGGTATGTCCGAAGCATGCGAGCTTATGGAGTTCAATTTAAAGAAGGACCGGATGGTTTTGGTGTATATGCTTCCAAAGATGTAGAGCCTCTTCGTCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTTCCAGATATAATTCCCTTGGATCATCCAATATTTGATATTATTAACTCAACAGATCCAGAGACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATTCGCATTTGACTGTGAAGGCAATTTCTGGCAATTGTATGGTGACTTCTTACCGAGTGCAGATGAGTGCACTAGCCTACTTCTAGCTTCAGAGGAAGAACTTCTGGAGCTACAGGATCCCAATCTTGCTTCCACTATTCGAAAGCAGCAACATCGGGCCTTAGAATTCTGGCACAAAAATTGGCACAGTGATACACCCCTTAAGATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTAAGTATTGCACAGTCACGATGCATTAACATGGAAACAAGGATTGGTGCTCTAAATCAAGAGGCAAACATGCTGATTCCTTATGCTGACATGCTGAACCATTCCTTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTCATAAATGCTGGACATCGCGTTAGAAAGGGAGATGAGATGACAGTTAACTACATGAGTTCGCAGAAGAACGACATGTACATGCAAAGATATGGATTTTCATCACCTGTGAATCCATGGGATGAGGTACAATTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCGTGAAGAGTATTACCATAACAACGATCTATCAAAGGCTGGCGATACTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAAGTTGGTCGGACGGGGATGTGCCTCCAATCCCTAGTGTGGAAAGAGAGGCCGTGAAGGAGCTGCAAAATGAATGCCAAAAAATGCTCGCAGGATTTGGTACAACCTCTAAGCAAGACCAGAAATTGCTAGATTCCATGACAGATGCTACGAGGACACTTGAAGCTGCAATTAAGTATAGATTGCACAGAAAGTTGTTGATGGAGAAAGTTATCAAAGCATTAGAGATATACCAAGAGAAAATACTGTTCTGA 1452 0.4339 MASSSPLYQPTHTIFSNTQFKGLRSGFFWRPTYSFGTLAENKARPIKTSVAKSPFPLFLPPQVEEESPSELEPVDPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTDPETDWDLRLACLLLFAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPNLASTIRKQQHRALEFWHKNWHSDTPLKIKRLARDPQRFIWAVSIAQSRCINMETRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGHRVRKGDEMTVNYMSSQKNDMYMQRYGFSSPVNPWDEVQFSGNARIHLDSFLSIFNISGLREEYYHNNDLSKAGDTFVDGAVIAAARTLPSWSDGDVPPIPSVEREAVKELQNECQKMLAGFGTTSKQDQKLLDSMTDATRTLEAAIKYRLHRKLLMEKVIKALEIYQEKILF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00559 483 FunFam Plastid transcriptionally active 14 360 480 - -
Lapu9g00559 483 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 84 338 - -
Lapu9g00559 483 Pfam Rubisco LSMT substrate-binding 413 464 IPR015353 -
Lapu9g00559 483 Gene3D set domain protein methyltransferase, domain 1 84 338 - -
Lapu9g00559 483 Gene3D - 360 481 IPR036464 -
Lapu9g00559 483 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 476 IPR036464 -
Lapu9g00559 483 CDD SET_LSMT 91 338 - -
Lapu9g00559 483 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 69 453 - -
Lapu9g00559 483 SUPERFAMILY SET domain 99 339 IPR046341 -
Lapu9g00559 483 Pfam SET domain 100 323 IPR001214 GO:0005515
Lapu9g00559 483 ProSiteProfiles SET domain profile. 79 324 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu9g00559 SET 2.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00559 - - gmx:100790985 874.004