Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00550 ATGAAAGAAGCATCAATGAGGATTCCAACCTTTGCTATTGTGCTCCTCCTGTGCTTTTCTTGTGCACTCCTTTGCCATGGCAATGAGAGCACCATGAGAGTGCTTTTGGAGGTGAAATCATCTTTCACAGAAGACCCAGAAAATGTTTTAAGCGATTGGTCAGAGAACAACACCGATTACTGTAGTTGGAGAGGGGTGTCATGTGGGTCAAAGAAGTTCAATTCTTTGGATGATGATGACGACTCGGTGCAAGTGGTGGGACTCAACCTGTCCGAGTCATCACTCAGAGGGTGGATATCACCTTCACTCGCTCGCTTGGGAAACCTGCTCCACCTTGATCTCTCTTCTAACCACCTCGAGGGTCCCATTCCATCTGCCCTCTCCAACCTCACATCGTTGGAATCTCTCTTTCTCCACTCGAACCAACTCACCGGTCAAATCCCCAAGTTGGACTCGCTAATGCGGCTGCGAGTTTTGCGAATCGGCAACAATCAACTCAGTGGCCCGATTCCCTACACACTTGGGTATATGCCCAGCCTTGAGTACCTTGGTTTAGCCTCATGCAGACTCACCGGTCCGATCCCGCCCGAACTTGGTCGACTCAGTGAGTTAAAATATTTGATTCTTCAGGAAAACGAGTTGACTGGGCCGATTCCATTCGAAGTGGGGTACTGCTGGAGCCTTCAAGTCTTCACCGCGGCCGGGAACAGACTCAATGGCTCGGTCCCGGGTGAACTGAGTCTAATCAGGAAACTTCAAACTCTGAACCTTGCCAACAACAGCTTAACCGGGTCGATTCCGAGTCAACTCGGTAAGCTGAGTCATCTTGAATATCTGAATTTCATGGGGAACCAACTCGAGGGTCGTATTCCACCGTCTTTAGCTAAATTGGCTAACCTTCAAAATCTTGACTTGTCATATAATATGCTTAGTGGGGAAATTCCAGAGGAGTTAGGGAACATGGGTCAGCTACAATATTTGGTTCTCTCAGGGAACAAACTCTCTGGGACAATTCCAAGAACCATATGTTCCAATGCAACAAATTTGGAGAACTTGATGATAGCAGAGAGTGGACTTCATGGTGAGATACCAGCTGAGTTGGGTCAGTGTCAATCCCTGAAACAACTTGATTTATCTGGCAATTATCTCAATGGGTCGATACCTACTGAGGTTTATGGGTTGATGGGGCTAACAGATCTCTTGCTTCACAACAACACTTTGGTAGGTTCAATCTCTCCCTTCATAGGAAACCTCACTAACATGCAGACTCTTGCATTGTTTCATAACAACTTGCAGGGTAATCTGCCCAGGGAGATTGGGAGGCTTGGGAAATTGGAGATAATGTATCTTTATGATAATCAGTTGTCAGGGAAGATTCCTTTGGAGATTGGTAACTGTTCAAGCTTGCAAATGCTTGATTTATTTGGAAACCAATTCAGTGGTGTAATTCCCTTCACTATAGGGAGGCTGAAAGAGTTGAACTTTTTGCACCTTAGGCGGAATGAGCTCGTGGGTGTGATTCCCCCCACACTTGGGAACTGTCATAAACTGACTGTGCTGGATTTGGCAGATAATCGGCTCTCAGGTGGCATTCCTGCAACATTTGGATTCCTCAAAGAGTTGAAGCTGTTCATGCTCTACAACAATTCTCTTGAAGGTAGTCTTCCTCACCAACTTGTAAATGTAGCAAACCTGACCAGAGTAAATCTTTCAAATAACAGACTGAGTGGTAGTTTGGCTGCATTATGTAGCTCTTGGTCCTTTCTTTCTTTTGATGTCACAGATAATGGATTTGATGGTGAAATACCCTTTCTCCTGGGAAATTCACGTGCCCTTGAGAGGCTGAGATTAGGTAACAACAAGTTTTCTGGTGAAATTCCTAGGACATTAGGAAAGATCACCGCACTGTCATTGTTAGACGTCTCTGGAAATTCACTCACGGGACCAATACCAGGCGAGCTTTCTTTGTGCAATAACCTGACTCACATTGATTTAAACAATAACCTTCTAACTGGACATATACCACCATGGCTTGGAAGTTTGCCTCAGTTGGGAGAGGTCAAGCTCTCATTCAATCAATTTTCTGGGTCTATTCCACTAGGCCTACTCAAAAAACCCAATTTGCTGGTTCTTTCCTTGAATAACAATTCTCTTAGTGGAAGTCTCCCAGATGATATTGGTGATCTTGTATCTCTTAATGTTCTCAGGCTTGACCGTAATAACTTCTCTGGACCAATCCCTCAAGCAATAGGTAAATTGAGAAATCTTTATGAGCTGCAGCTAGCCAGGAATGACTTTAGTGGCCAAATACCAATTGAGATTGGAAGTCTCCAAAATTTGCAAAGCATTCTGGACTTAAGTTACAATAATCTCTCTGGTCTTATCCCATCTTCACTTAGCATGCTGTCAAAATTGGAAGTACTTAATGTTTCTCACAATGAACTCGGCGGAGAAGTGCCTTCAGTAGTTGGTGAAATGAGGAGCCTGCAGAAACTTGACATCTCTTACAATAACCTTCAAGGTGCATTGGATAAGCCATTCTCCCGCTGGCCACATGAGTCCTTTGAAGGGAACCTTCATCTTTGCGGAGCCTCTCTTGCAAGCTGCAAAAGTGGAGAGGCAGTGAAAGATTTCAGGTGGCAAGATATCATGGATTCCACAAACAATCTAAGCGATGAGTTCGTAGTTGGTTGTGGAGGTTCTGGGACAGTCTACAGAGTTGAATTACCCACTGGAGAGACTGTGGCCGTGAAGAAGATTTCAGGGAAAGATGATTATCTGTTGAACAAAAGCTTTATAAGAGAAATTAAGACTTTAGGGAGGATCAAACACAGACATCTGGTAAAACTGATGGGTTGTTGTAGCAATAGAAACAAAGGAACAGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTTTGGGATTGGCTACATGGGGTGCCCCTCAAAGCAAAGAGGATCCTTGATTGGGACACAAGGTTCAAAATTGCGACAGGATTAGCTCACGGAGTGGAGTACCTCCATCACGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTACTAGATTCCAACATGGAGGCACACCTGGGAGACTTTGGACTGGCAAAATCACTCGTTGAGAATCCAGAATCAAATACTGAATCCAATTCTTGCTTTGCTGGATCTTATGGATACATAGCCCCAGAGTATGCATACTCACTGAAGGCCACAGAGAAAGCTGACGTGTACAGCATGGGAGTTGTGCTTATGGAACTAGTTACTGGTAAAATGCCAACAGATGAAGCTTTCAGAGCAGAGATGAACATGGTGAGATGGGTGGAGATGCACCTTAACAAGGAAGGCATTGCAGATGAAGCAGTGATAGATCCTCAGCTGAAACCCCTCTTGCCTGGTGAAGAGTTTGCTGCATTGCAGGTGCTTGAGATAGCCCTACAGTGCACAAAAACTTCACCACAAGCGAGGCCAACATCAAGACAAGTATGCGATCATCTCCTGCACGTATCCAACAACAAAATTGTGGATTTTGAGAAGAAGAATCTGGATCATTACTGGTGA 3582 0.4447 MKEASMRIPTFAIVLLLCFSCALLCHGNESTMRVLLEVKSSFTEDPENVLSDWSENNTDYCSWRGVSCGSKKFNSLDDDDDSVQVVGLNLSESSLRGWISPSLARLGNLLHLDLSSNHLEGPIPSALSNLTSLESLFLHSNQLTGQIPKLDSLMRLRVLRIGNNQLSGPIPYTLGYMPSLEYLGLASCRLTGPIPPELGRLSELKYLILQENELTGPIPFEVGYCWSLQVFTAAGNRLNGSVPGELSLIRKLQTLNLANNSLTGSIPSQLGKLSHLEYLNFMGNQLEGRIPPSLAKLANLQNLDLSYNMLSGEIPEELGNMGQLQYLVLSGNKLSGTIPRTICSNATNLENLMIAESGLHGEIPAELGQCQSLKQLDLSGNYLNGSIPTEVYGLMGLTDLLLHNNTLVGSISPFIGNLTNMQTLALFHNNLQGNLPREIGRLGKLEIMYLYDNQLSGKIPLEIGNCSSLQMLDLFGNQFSGVIPFTIGRLKELNFLHLRRNELVGVIPPTLGNCHKLTVLDLADNRLSGGIPATFGFLKELKLFMLYNNSLEGSLPHQLVNVANLTRVNLSNNRLSGSLAALCSSWSFLSFDVTDNGFDGEIPFLLGNSRALERLRLGNNKFSGEIPRTLGKITALSLLDVSGNSLTGPIPGELSLCNNLTHIDLNNNLLTGHIPPWLGSLPQLGEVKLSFNQFSGSIPLGLLKKPNLLVLSLNNNSLSGSLPDDIGDLVSLNVLRLDRNNFSGPIPQAIGKLRNLYELQLARNDFSGQIPIEIGSLQNLQSILDLSYNNLSGLIPSSLSMLSKLEVLNVSHNELGGEVPSVVGEMRSLQKLDISYNNLQGALDKPFSRWPHESFEGNLHLCGASLASCKSGEAVKDFRWQDIMDSTNNLSDEFVVGCGGSGTVYRVELPTGETVAVKKISGKDDYLLNKSFIREIKTLGRIKHRHLVKLMGCCSNRNKGTGWNLLIYEYMENGSVWDWLHGVPLKAKRILDWDTRFKIATGLAHGVEYLHHDCVPKIIHRDIKSSNILLDSNMEAHLGDFGLAKSLVENPESNTESNSCFAGSYGYIAPEYAYSLKATEKADVYSMGVVLMELVTGKMPTDEAFRAEMNMVRWVEMHLNKEGIADEAVIDPQLKPLLPGEEFAALQVLEIALQCTKTSPQARPTSRQVCDHLLHVSNNKIVDFEKKNLDHYW* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00550 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 293 389 - -
Lapu9g00550 1193 SMART serkin_6 890 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00550 1193 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515
Lapu9g00550 1193 Pfam Leucine Rich Repeat 659 681 IPR001611 GO:0005515
Lapu9g00550 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 196 292 - -
Lapu9g00550 1193 SUPERFAMILY L domain-like 585 866 - -
Lapu9g00550 1193 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Lapu9g00550 1193 SUPERFAMILY L domain-like 359 651 - -
Lapu9g00550 1193 SUPERFAMILY RNI-like 87 408 - -
Lapu9g00550 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 581 873 - -
Lapu9g00550 1193 Gene3D Ribonuclease Inhibitor 583 873 IPR032675 -
Lapu9g00550 1193 ProSiteProfiles Protein kinase domain profile. 890 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00550 1193 Pfam Protein kinase domain 895 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00550 1193 Pfam Leucine rich repeat 754 815 IPR001611 GO:0005515
Lapu9g00550 1193 Pfam Leucine rich repeat 250 310 IPR001611 GO:0005515
Lapu9g00550 1193 Pfam Leucine rich repeat 516 575 IPR001611 GO:0005515
Lapu9g00550 1193 Gene3D Phosphorylase Kinase; domain 1 874 970 - -
Lapu9g00550 1193 FunFam Leucine-rich repeat receptor-like protein kinase 971 1190 - -
Lapu9g00550 1193 Gene3D Ribonuclease Inhibitor 288 392 IPR032675 -
Lapu9g00550 1193 Gene3D Transferase(Phosphotransferase) domain 1 971 1191 - -
Lapu9g00550 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 862 970 - -
Lapu9g00550 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1018 1030 IPR008271 GO:0004672|GO:0006468
Lapu9g00550 1193 SUPERFAMILY Protein kinase-like (PK-like) 876 1174 IPR011009 -
Lapu9g00550 1193 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 195 - -
Lapu9g00550 1193 FunFam Uncharacterized protein 390 483 - -
Lapu9g00550 1193 SMART LRR_typ_2 418 442 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 562 585 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 249 273 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 490 514 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 681 705 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 177 201 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 826 857 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 106 129 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 297 320 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 706 729 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 321 345 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 130 154 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 777 801 IPR003591 -
Lapu9g00550 1193 SMART LRR_typ_2 802 824 IPR003591 -
Lapu9g00550 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 484 580 - -
Lapu9g00550 1193 ProSiteProfiles Leucine-rich repeat profile. 132 154 IPR001611 GO:0005515
Lapu9g00550 1193 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 483 1172 - -
Lapu9g00550 1193 ProSitePatterns Protein kinases ATP-binding region signature. 896 919 IPR017441 GO:0005524
Lapu9g00550 1193 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Lapu9g00550 1193 Gene3D Ribonuclease Inhibitor 487 582 IPR032675 -
Lapu9g00550 1193 Gene3D Ribonuclease Inhibitor 393 486 IPR032675 -
Lapu9g00550 1193 Gene3D Ribonuclease Inhibitor 193 287 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00550 Lapu-Chr9 6280018 6284045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00550 582 849 Receptor kinase-like Gene Family AT1G17750 32.993 7.64e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu9g00550 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00550 - - csav:115706097 1467.6