Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00518 ATGGAGAAAGAGAGATCAGGAGGGGAAGAAGTGAAGTACCGTGGTGTGAGAAAGAGACCATGGGGTAAGTTTGGAGCAGAGATTAGAGATCCAACAAAACCTGCGGGAAGACAATGGTTGGGAACATTTGACACTGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCAATCCTTAATTTTCCCGATGAGTATTATTCTCATCTTCCTTTTCTACAGTCAAATTCTTCTACTAAGGACAATGGAAGTTCTTTTGCTAGGAAGGAAGTTATTGAGTTCGAGTATTTGGATAACAAGGTGTTGGAGGATCTTCTTGAGATAGAAGAGAAGAGAAGGAATGAAGATTAG 372 0.422 MEKERSGGEEVKYRGVRKRPWGKFGAEIRDPTKPAGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFLQSNSSTKDNGSSFARKEVIEFEYLDNKVLEDLLEIEEKRRNED* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00518 123 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Lapu9g00518 123 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Lapu9g00518 123 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Lapu9g00518 123 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Lapu9g00518 123 PANTHER DNA-BINDING DOMAIN 5 114 IPR044808 GO:0003700|GO:0009873
Lapu9g00518 123 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Lapu9g00518 123 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Lapu9g00518 123 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Lapu9g00518 123 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Lapu9g00518 123 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00518 Lapu-Chr9 5895274 5895645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00518 9 120 AP2-EREBP Transcription Factor Family AT3G23230 57.258 3.00e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g00518 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00518 - - vra:106779050 215.698