Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00517 ATGAATTCATTCTGTCCATCAATTCTCTTGATTTTCCCTAGGATTAGGTTTTTATATATTGACTTCCTTACATATGGTGAAGATCCGCCACTGCATAGAGACCCAACAAAACCTACGGGAAGACAATGGTTGGGGACATTTAACACTGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCGATCCTTAATTTTCCCGATGAGTACCACACTCATCTCCCTTTCTTATCATCATCATCATCATCATCGTCTTCTTCTTCTTCCACTAGTGTCATTGGAAGTTCTTCTACTGCACAAAGAGAAGTTATTGAGTTTGAGTATTTGGATGACAAGTTATTGGAAGAACTTCTTGAGTTAGAGGAGAAGAGAGAGAAGAAAGAATGA 408 0.402 MNSFCPSILLIFPRIRFLYIDFLTYGEDPPLHRDPTKPTGRQWLGTFNTAEEAARAYDRAAIGLRGALAILNFPDEYHTHLPFLSSSSSSSSSSSSTSVIGSSSTAQREVIEFEYLDDKLLEELLELEEKREKKE* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00517 135 Gene3D AP2/ERF domain 31 75 IPR036955 GO:0003700|GO:0006355
Lapu9g00517 135 ProSiteProfiles AP2/ERF domain profile. 33 74 IPR001471 GO:0003700|GO:0006355
Lapu9g00517 135 PANTHER DNA-BINDING DOMAIN 33 131 IPR044808 GO:0003700|GO:0009873
Lapu9g00517 135 SUPERFAMILY DNA-binding domain 33 76 IPR016177 GO:0003677
Lapu9g00517 135 MobiDBLite consensus disorder prediction 84 106 - -
Lapu9g00517 135 Coils Coil 117 135 - -
Lapu9g00517 135 CDD AP2 33 75 IPR001471 GO:0003700|GO:0006355
Lapu9g00517 135 Pfam AP2 domain 42 66 IPR001471 GO:0003700|GO:0006355
Lapu9g00517 135 SMART rav1_2 30 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00517 Lapu-Chr9 5884837 5903159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00517 33 131 AP2-EREBP Transcription Factor Family AT3G23230 63.208 2.35e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g00517 AP2 6e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00517 - - gmx:100807295 101.293