Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00516 ATGTCTGCAATATTTATACATGAGCAATTTCTTTTTGGTGGACACGAAGGAGTGAGGCAGCGTCCATGGGGAAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAACGAGGGTATGGCTTGGAACTTTCGAAACTGCAGAAGCTGCAGGTCTTGCTTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTCCTGAGAGGGTTCAAGGCACTGGCGAGTTTGGTTACCTCACAAATCAACACCTCTCATCAAGAAAAACTCACCACACTTCCAAAGTTGATTCAACACCGGAACCTCTTTCTTCGAAACTTGATTCATCTTTTTCTGGCGGTGGCACCAACAACGAAGCTTGCATAA 375 0.4587 MSAIFIHEQFLFGGHEGVRQRPWGKWAAEIRDPKKATRVWLGTFETAEAAGLAYDEAALRFKGSKAKLNFLRGFKALASLVTSQINTSHQEKLTTLPKLIQHRNLFLRNLIHLFLAVAPTTKLA* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00516 124 CDD AP2 15 70 IPR001471 GO:0003700|GO:0006355
Lapu9g00516 124 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Lapu9g00516 124 Gene3D AP2/ERF domain 15 72 IPR036955 GO:0003700|GO:0006355
Lapu9g00516 124 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Lapu9g00516 124 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Lapu9g00516 124 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Lapu9g00516 124 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Lapu9g00516 124 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Lapu9g00516 124 FunFam Ethylene-responsive transcription factor 2 14 72 - -
Lapu9g00516 124 PANTHER DNA-BINDING DOMAIN 16 81 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00516 Lapu-Chr9 5856768 5857494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00516 15 102 AP2-EREBP Transcription Factor Family AT5G61890 61.364 2.76e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g00516 AP2 6.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00516 - - sly:101267882 112.849