Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00501 CTGACACTCACCATGGATAAATTTCTGAATGACATGGAAAGAGAGAAACCAACAAGGTTCACTAATCAGCAGCTAAGGATTGCAACAGATAACTTCTCTAACTTCTTGGGGTCAGGAGGTTATGGATCTGTTTACAAGGGAGTTTTTAGTAATGGAACCGTGGTGGCTGTGAAGGTTCTTAATGGGAGTTCAGACAAGAGAATTGAAGAGCAGTTCAAGGCAGAAGTTGGTACAATTGGCAGAATTCATCATTTCAATCTGGTTCGGCTATATGGATTTTGTTTTGAAAGAAATATGATAGCACTAGTTTATGAGTACATGGGAAATGGCTCTCTTGACAGGTATTTGGTCAATGACAAAAACACCTTAGGACATGAAAAGCTTCATGAGATTGCAGTTGGGACAGCCAGAGGAATTGCTTATTTGCATGAAGAGTGCCAACAAAGAATAGTCCATTATGACATAAAACCAGAAAATATTCTCTTGGATGGGAATTTCAATCCTAAAGTTGCTGATTTTGGTTTAGCCAAGCTTTGCAACAGGGAAAATACTCATCTAACATTGACAAAGGGTAGGGGAACTCCTGGTTATGCTGCACCTGAACTTTGGATTCCTAATTTTCCTGTGACTCACAAGTGTGATGTTTATAGTTTTGGAGTGCTGCTATTTAAAATCATGGGCAGGAGAAGAAACACTGATGAGAATCTTGGAGAAAGCGAAGAGTGGTTTCCAATGTTGGTTTGGAAAAAATTTGACTCTGGACAACTGGGGGAGTTAATAATAGAGTGTGGGATAGAGCAGAAAAGTAAAGACATTGCAGAAAGAATGGCCAAGGTGGCTTTGTGGTGTGTGCAATATAGGCCAGAATTCAGGCCCGTAATAGGTCTTGTGGTGAAAATGCTGGAAGGTTCAGTTGAAATTCCAGAACCTATGAACCCATTTCAGCACATGATGGGATGTTCCTTTCCTTCACACAATCTCTCGACATTACTTTAG 996 0.4026 LTLTMDKFLNDMEREKPTRFTNQQLRIATDNFSNFLGSGGYGSVYKGVFSNGTVVAVKVLNGSSDKRIEEQFKAEVGTIGRIHHFNLVRLYGFCFERNMIALVYEYMGNGSLDRYLVNDKNTLGHEKLHEIAVGTARGIAYLHEECQQRIVHYDIKPENILLDGNFNPKVADFGLAKLCNRENTHLTLTKGRGTPGYAAPELWIPNFPVTHKCDVYSFGVLLFKIMGRRRNTDENLGESEEWFPMLVWKKFDSGQLGELIIECGIEQKSKDIAERMAKVALWCVQYRPEFRPVIGLVVKMLEGSVEIPEPMNPFQHMMGCSFPSHNLSTLL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00501 331 SMART serkin_6 30 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00501 331 PIRSF ILK 4 309 - -
Lapu9g00501 331 Pfam Protein kinase domain 34 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00501 331 Gene3D Phosphorylase Kinase; domain 1 5 106 - -
Lapu9g00501 331 ProSiteProfiles Protein kinase domain profile. 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00501 331 PANTHER OS07G0415500 PROTEIN 8 313 - -
Lapu9g00501 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lapu9g00501 331 Gene3D Transferase(Phosphotransferase) domain 1 107 310 - -
Lapu9g00501 331 FunFam serine/threonine-protein kinase PBS1-like 4 106 - -
Lapu9g00501 331 FunFam Putative receptor-like protein kinase 107 309 - -
Lapu9g00501 331 ProSitePatterns Protein kinases ATP-binding region signature. 36 58 IPR017441 GO:0005524
Lapu9g00501 331 SUPERFAMILY Protein kinase-like (PK-like) 13 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00501 Lapu-Chr9 5642518 5654083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00501 19 314 Receptor kinase-like Gene Family AT5G38280 41.254 8.69e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lapu9g00501 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00501 - - gmx:100803355 547.74