Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00498 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGATGACGACGACGCCGCTTCCTTTCTCCTCAACGACGACGATGACGGCGACGTCGCCGGACCCCTCCCCTTCCCCGTCCTCCAGACCGCGCCCTGCGGTTTCGTCGTCACCGACGCGCTCGAGCCCGACCACCCTATTATATACGTCAACGCCGTTTTCGAGATGGTTACCGGTTACCGCGCAGAAGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTTGTTTCAGAGATTAGAAGATCCCTTGATGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCATCTGACACCTATATATGGAGATGATGAGATAACTCATGTAATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCAAGTTCTAAGATTAAGGAATATACTAAATCTTCAGATCAATTTCGTTCGGTCCTTTCCTCATTGAATCCTCTTCATGTTGGGGACCGTAATGTTACTCGTGGAGTTTGTGGGATATTGCAATTAAGTGACGAAGTATTGTCTCTCAAGATACTTGCTCTCTTGACTCCAAGAGATATTGCATCTGTTGGTTCTGTTTGTAGGCAGTGGTATGAGCTAACAAAAAATGAAAACCTTTGGAGAATGGTGTGTCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTAGAGACGGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCTTGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACTTTTGTACTGGATCTTAATTCTGGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGACGATGGGGCCACACACTTTCTTGTGTTAATAGTTCCCGTTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTACTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATCTCTGGACTGGCACCTCCCCTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTCCTTGATCTCTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTAACATGGACTCCACCTTCGCGTCTGGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCTCTGCGTTTCCACTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGTTGGAGGAGTGTAACAGGGAGTGGAATGCCAGGCGCTGGAAATCCAGGAGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGATCCGACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGATCTCCATGAACTTTCCTTGGCATGTTCTGTCATCTAA 1845 0.4818 MEWDSNSDLSGDDDDAASFLLNDDDDGDVAGPLPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRSLDEGVEFQGELLNFRKDGSPLMNRLHLTPIYGDDEITHVIGIQFFTEANIDLGPLPSSKIKEYTKSSDQFRSVLSSLNPLHVGDRNVTRGVCGILQLSDEVLSLKILALLTPRDIASVGSVCRQWYELTKNENLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSGNPEWQHVQVSSPPPGRWGHTLSCVNSSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFHSSDVFTMDLSEEEPCWRSVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLACSVI* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00498 614 SUPERFAMILY PYP-like sensor domain (PAS domain) 41 151 IPR035965 -
Lapu9g00498 614 MobiDBLite consensus disorder prediction 1 22 - -
Lapu9g00498 614 Gene3D - 480 612 IPR015915 GO:0005515
Lapu9g00498 614 Gene3D PAS domain 35 162 - -
Lapu9g00498 614 FunFam Putative LOV domain-containing protein 480 613 - -
Lapu9g00498 614 NCBIfam PAS domain S-box protein 54 150 IPR000014 -
Lapu9g00498 614 SUPERFAMILY Galactose oxidase, central domain 285 599 IPR011043 -
Lapu9g00498 614 CDD F-box_AtADO-like 201 247 - -
Lapu9g00498 614 Gene3D - 198 246 - -
Lapu9g00498 614 FunFam Putative LOV domain-containing protein 275 479 - -
Lapu9g00498 614 SUPERFAMILY F-box domain 194 263 IPR036047 GO:0005515
Lapu9g00498 614 Pfam Galactose oxidase, central domain 298 348 - -
Lapu9g00498 614 CDD PAS 41 143 IPR000014 -
Lapu9g00498 614 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 34 610 - -
Lapu9g00498 614 Pfam Kelch motif 522 569 IPR011498 GO:0005515
Lapu9g00498 614 MobiDBLite consensus disorder prediction 1 23 - -
Lapu9g00498 614 Pfam PAS domain 42 151 IPR000014 -
Lapu9g00498 614 Pfam Galactose oxidase, central domain 362 409 - -
Lapu9g00498 614 ProSiteProfiles PAS repeat profile. 37 112 IPR000014 -
Lapu9g00498 614 Gene3D - 276 479 IPR015915 GO:0005515
Lapu9g00498 614 FunFam Adagio protein 1 35 162 - -
Lapu9g00498 614 Pfam F-box-like 210 248 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00498 Lapu-Chr9 5618661 5625115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00498 37 152 AGC Kinase Gene Family AT5G58140 35.043 3.85e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00498 K12115 - gmx:100802828 1140.18