Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00470 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTGGAAAATCCTGTTACTCAAAGGAACAGATTAAGTCCAAGCTATTTTCATCAAAATTAAAAACAAGTAGCACAAAACACCAAAGGAAGGAACACAAAGTGAGGTCAAGATCTCATAAACACAGAGTCGGTACGAAAGCATCAAAGAAAAGAGTTGTTGATTCTTCTATCAAGGCACCGCTTGAGGACTCTTCAAATAAAAAAGTGATTATTAGAAAAACACTCCATAAAACTGATGGGAACTCTTCACGGATGGTGTCTTCAACAAAGCTACAAGGAAGAAAAAATCCTCTTAGTTCTAGAAAAGAGGGGAATGATGTTGATGAAGAGGCAAAGATTAAAAAACGTAAGAGGGGAAAAAAGAAGAATAGACAAAGGGACAGCATGGATCTTGATGATGCTTCACGCCTTCGAAGGAGAACAAGATACCTCTTAATCAAAATGAAGCTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGAACATGCAATCGTGCTTTTCACCAAAGATGTCTAAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATAATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGATATTGCATTATTAAATCACGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACTGCCATAGCATCAACACAGAAGGAGCTGATGAAAATGCATCCAATGATTCAACCAGTTCTTTGAGTTTGTGGTCTTTGAATGGAGAATGTCCTCCAGTAGATGAAAACCTTAGTCATGAATATTATTCTGTTAATAGCTTCATTGATTCTGATGAATCGGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAACCGTTGACTACAAGAAACTGTATGATGAAATGTTTGGGAAGGATGGTCCACCGTGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAAAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACTCTGCATGAAAGTGAAAATAAATATCCCAATAGTGAGGGCAATGATAGAATAAGAGAGGGTTCTTCAGGCTTACAAATAAGACGATCTTGTTTCAGGATTCCACTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAACGAGCTTCCTCCAAGATCTGTGAAGGAAGGTCTTTCGAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACATCTCAGATATCAAAGGATTCTACATCTCCAAACAAGGAGAAAGACGAGTTTCTGAAATCAGAAGTCCCTAAAATTACTGTGATTCATTCCCAGAAGGATGGTCAAAACATCACAGGACAAGAGAAAAATAAATTATGTAACAGTCTTTTGAAGAAAAGGAAGCAAAAACCATCTCCACCTCTGTCAAGAGAAAATAGCAACAAGGACTCTATGGAGATCAGTGATGATGTTCATTTGAAGAAACCTTTGAAAGAAAGGAAAAGAAGGGTAAATTTTATGTATGAAGGAGACTCTCAGACAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAATGAAGTTCAAAATTGCAGAGTAAAGGGATCAAATGAACCCTCTATTATATATGTTCCCACTGCCCAATTAAGGGAAAAGGTTGAGTTATAA 2145 0.3846 MRDAENLNKKGSGKSCYSKEQIKSKLFSSKLKTSSTKHQRKEHKVRSRSHKHRVGTKASKKRVVDSSIKAPLEDSSNKKVIIRKTLHKTDGNSSRMVSSTKLQGRKNPLSSRKEGNDVDEEAKIKKRKRGKKKNRQRDSMDLDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEIIESTNAHLGTQFSLDSSWQDVFKEEAAMPDGDIALLNHEEEWPSDDPEDDDYNPERKEDCHSINTEGADENASNDSTSSLSLWSLNGECPPVDENLSHEYYSVNSFIDSDESGEIACGRRQRKTVDYKKLYDEMFGKDGPPCEQVSEDEDWGPGKKKRREKESDAVNTLMTLHESENKYPNSEGNDRIREGSSGLQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSQISKDSTSPNKEKDEFLKSEVPKITVIHSQKDGQNITGQEKNKLCNSLLKKRKQKPSPPLSRENSNKDSMEISDDVHLKKPLKERKRRVNFMYEGDSQTAELEFERLSKVKSKVDSMKQKLNEVQNCRVKGSNEPSIIYVPTAQLREKVEL* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00470 714 MobiDBLite consensus disorder prediction 431 457 - -
Lapu9g00470 714 Pfam PHD-finger 235 290 IPR019787 -
Lapu9g00470 714 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 91 106 - -
Lapu9g00470 714 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Lapu9g00470 714 Gene3D - 490 557 - -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 555 569 - -
Lapu9g00470 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Lapu9g00470 714 SMART HOX_1 490 552 IPR001356 GO:0003677
Lapu9g00470 714 Coils Coil 670 690 - -
Lapu9g00470 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 15 712 - -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 611 640 - -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 107 125 - -
Lapu9g00470 714 SUPERFAMILY Homeodomain-like 491 554 IPR009057 -
Lapu9g00470 714 FunFam pathogenesis-related homeodomain protein 490 554 - -
Lapu9g00470 714 CDD homeodomain 496 543 IPR001356 GO:0003677
Lapu9g00470 714 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 34 58 - -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 11 33 - -
Lapu9g00470 714 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Lapu9g00470 714 FunFam pathogenesis-related homeodomain protein-like 227 287 - -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 555 582 - -
Lapu9g00470 714 SMART PHD_3 235 288 IPR001965 -
Lapu9g00470 714 CDD PHD_PRHA_like 235 287 IPR045876 -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 332 372 - -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 1 144 - -
Lapu9g00470 714 MobiDBLite consensus disorder prediction 76 90 - -
Lapu9g00470 714 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00470 Lapu-Chr9 5172396 5179135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00470 135 553 Homeobox Transcription Factor Family AT4G29940 57.773 9.50e-156 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lapu9g00470 PHD 8.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00470 - - gmx:100787118 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00470 9 5172396 5179135 Lapu9g00470 9 5172396 5179135 ECH
Lapu3g00580 3 5936885 5941820 Lapu9g00470 9 5172396 5179135 PCT