Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00467 ATGACGACGGAGCAGACAAAGTTCAGCGTCTTGTGCAGCCTCTTCACGTGGACGCAGCGCACCAAGTCGCCGGCCAAGAAGCGCTCCAAGTTCCGCAAGTTCCTCGACGCTTTCTGCATTGACCGCAACTTCTTCCCCGCCGTTCGCCTCATTCTCCCTAACCTCGATCGCGAACGCGGCTCCTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATTGACGCCCTCGGCATCTCCCGCGACTCCCCCGATGCCCTCCGACTCGTCAATTGGCGCAAGGGCGGTGCCGCCACTGGCGCCACAGCGGGAAATTTCGCTCTCGTCGCCGCTGAGGTGCTGCACCGCAGGCAAGGGACTGCTTCGGGTGGGTTGACGATAAGGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAATGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAAAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGCGACCGAATTCAAATTCATAAAAATGGAACAGAGATACATTTTTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGCAATATCAGAAATCATAATACAAAATGTTCTTGTCGATAGGTGTATCCTTGATGGTGAAATGTTGGTGTGGGACACAACCTCGAAACGTTTTGCCGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGATAGTGACAGACAGTTATGCTATGTTGCGTTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAAACTTTGAAGGAACGCCATGAGCTTTTATGTAAAATTGTTAGGCCAATGAAGGGGAAATTGGAAATTTTGGTACCTAATGCTGGTATTAACAGTCATCTTCCTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAATGTTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGGGATGAGGGAATTGTTTTAAAAGATCGGAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATTATAGGTGGATACTATGGTTCTGGACGACGTGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCCATCCCCAAATACACACCCTAAGCGATTTATATCCTTCTGCAGAGTGGGCACTGGACTCTCTGATGAGGAGCTTGATGTTGTAGTGACCAAACTAAAACCATACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCGAGTTTTTATCAAGTGACTAATCATTCAAAAGAAAGACCAGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTGTTTGCTGCACCTTACAGTCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGATGTTCAATCATTTATAGAACTAGTACATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAAAGAACGAAATCCTCCACTAGGGGAGAAAAGAAAAACATGTCCATCGTTCCTTCTCATTTAATTCAAACTGATATTTCCAGCATTAAGGGGGGCTCCTTGATTTTTTCAAATATGATGTTCTACTTCGCTAATGTGCCTCCATCGCATTCTCTTGAGTCCTTGCACAAAATAATTGCTGAGAATGGGGGAGCTTTTTCAATGAATTTGAATAACTCAGTCACACATTGTGTTGCCGCAGACAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGATTGCTATGAACAAAAGAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTGTCTGAACTGACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCGGACTCTTTCTACTTGGACCTTGATCTTGAAGACATCAAGCAGCTCTTAAGCTATATTCATAGGTATGAAGATGTCAGCACTGTCGATTATTATAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCCATTTATTTCCACACTGCAATACCTTCATTGAAAGGAGATTGGCATTGTATATTGCAACTTTCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAGGTGACCTCTGATCTTACTTGTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCCGACTGACTTTGAACAAATACTGAGGAGTTTCACTTCAGTAGAAAGGAAAATTCTCCAAAGCAAGAGGTTGCATATAGTTAAATCCCAGTGGTTGGAAGATTGTTCAGCCAGTAGCGAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGTCTACTGCTGAAGATTGTGAACAGGACTTGGTGTTGGAGGCTTGTCTGAGTGGAGATAATGCAAAAGATGAAAATACATCTTTCTCTGACAAGGGAAATCAGCCAAGAAGTGAAGAAGCTACGCGTGAAGACAGTACGGCCTTGTTATCCCAAGAGAAGGGTATCAAAAGGAAAAGAGGAAGACCTGCGGGCAGTGGCATAAAAAATGTAAAACCAGCTGGCAAAAAAATTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTGGTAAAATATGTGAGTATGAATCATCGGATGAAAGTGATTCTCGTGACAAGAGACCAATTGAGCAGGAGATTGACAAGAAACATTCAGAACCCCTGGAAAATGAGGAACGTGACAATGTCCAAGTTGCTGGGACAGTGGAAAGTTCTGAACAACATAAGGTAGACAAGCTAGAGAAGTTGAAGGACAATGAACATGAAAGAATGTTAGTTCCTGAAATAGAAATGACTGATAGGTACAATGACCGAAACAATGAGGTGATAGAGAACTTAGAATTTTCTGCTGACCCCCTGCAGGCGATGTTATTTGACATGATTCCTATTCTTGGCACCCAAAAAGTTAATCAACCTATGAATCTTAGAGTTAGAGAAGAAAAGCTACCAGAAACCTCCAATGCAGAAGCAGAGCCTACATCTACAGAGATAAAGAGGGTTAGCTTCAAGGATGTTGCTAATGAGCTGCTGAAGGACTGGTAG 3489 0.4279 MTTEQTKFSVLCSLFTWTQRTKSPAKKRSKFRKFLDAFCIDRNFFPAVRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLVNWRKGGAATGATAGNFALVAAEVLHRRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAISEIIIQNVLVDRCILDGEMLVWDTTSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHELLCKIVRPMKGKLEILVPNAGINSHLPSGEPCWSFIAHNVDEVERFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRTKSSTRGEKKNMSIVPSHLIQTDISSIKGGSLIFSNMMFYFANVPPSHSLESLHKIIAENGGAFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDSFYLDLDLEDIKQLLSYIHRYEDVSTVDYYRKKYCPKDKWSFFCGCSIYFHTAIPSLKGDWHCILQLSLRRFKLEVLMGGGKVTSDLTCATHLVAFLVPGCPTDFEQILRSFTSVERKILQSKRLHIVKSQWLEDCSASSERLPEDSYSLKPWGIEESTAEDCEQDLVLEACLSGDNAKDENTSFSDKGNQPRSEEATREDSTALLSQEKGIKRKRGRPAGSGIKNVKPAGKKIRRARPQNVKKPGKICEYESSDESDSRDKRPIEQEIDKKHSEPLENEERDNVQVAGTVESSEQHKVDKLEKLKDNEHERMLVPEIEMTDRYNDRNNEVIENLEFSADPLQAMLFDMIPILGTQKVNQPMNLRVREEKLPETSNAEAEPTSTEIKRVSFKDVANELLKDW* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00467 1162 FunFam DNA ligase 445 606 - -
Lapu9g00467 1162 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu9g00467 1162 SUPERFAMILY BRCT domain 656 741 IPR036420 -
Lapu9g00467 1162 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lapu9g00467 1162 MobiDBLite consensus disorder prediction 606 634 - -
Lapu9g00467 1162 SUPERFAMILY BRCT domain 792 912 IPR036420 -
Lapu9g00467 1162 SMART BRCT_7 807 900 IPR001357 -
Lapu9g00467 1162 SMART BRCT_7 654 730 IPR001357 -
Lapu9g00467 1162 MobiDBLite consensus disorder prediction 939 1058 - -
Lapu9g00467 1162 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu9g00467 1162 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Lapu9g00467 1162 Pfam BRCT domain, a BRCA1 C-terminus domain 654 737 IPR001357 -
Lapu9g00467 1162 FunFam DNA ligase 2 219 - -
Lapu9g00467 1162 FunFam DNA ligase 221 444 - -
Lapu9g00467 1162 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lapu9g00467 1162 MobiDBLite consensus disorder prediction 1003 1042 - -
Lapu9g00467 1162 CDD BRCT_DNA_ligase_IV_rpt1 656 742 - -
Lapu9g00467 1162 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Lapu9g00467 1162 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Lapu9g00467 1162 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lapu9g00467 1162 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Lapu9g00467 1162 MobiDBLite consensus disorder prediction 613 630 - -
Lapu9g00467 1162 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lapu9g00467 1162 ProSiteProfiles BRCT domain profile. 840 910 IPR001357 -
Lapu9g00467 1162 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Lapu9g00467 1162 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Lapu9g00467 1162 Gene3D - 445 606 IPR012340 -
Lapu9g00467 1162 Gene3D BRCT domain 666 779 IPR036420 -
Lapu9g00467 1162 PANTHER DNA LIGASE 4 4 1155 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Lapu9g00467 1162 MobiDBLite consensus disorder prediction 952 976 - -
Lapu9g00467 1162 CDD OBF_DNA_ligase_IV 449 593 - -
Lapu9g00467 1162 FunFam DNA ligase 667 781 - -
Lapu9g00467 1162 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Lapu9g00467 1162 FunFam DNA ligase 799 910 - -
Lapu9g00467 1162 Gene3D BRCT domain 798 910 IPR036420 -
Lapu9g00467 1162 NCBIfam ATP-dependent DNA ligase 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00467 215 602 Core DNA Replication Machinery Family AT1G08130 27.970 3.16e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00467 K10777 - gmx:100816002 2043.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00467 9 5121569 5143879 Lapu9g00467 9 5121569 5143879 ECH