Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00459 ATGGGCGAAGGGGAAGCAAAAGTTATGGTTCCGGAATCGGTGGTGAAAAAGGAGAAAAGGAATGAGGAGTGGGCTTTGGCCAAAAAACAGCAACTGGAAGCAGCAAAGAAAAAGAGGTTCGAAACGCGGAAATTGATATTTAGCAGAGCCAAACAGTACGCAAAGGAATACGAAGAGCAGCAAAAGGAACTCGTTAGGTTGAAGCGTGAAGCCAAGCTTAGAGGAGGGTTTTATGTTGACCCCGAAACTAAGCTCTTGTTCATCATCAGGATTCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCAACCTTGAATATGCTGCATAGGGTAGAACCTTATGTTACCTACGGGTACCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAAAGGGGCTTTGGAAAAGTTAACAAGCAGAGAATTGCTCTGACTGACAACTCTATTATTGAACAGACTTTGGGGAAGCATGGGATCATTTGCATTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCTAACAATTTTCTCTGGCCTTTCAAGCTCAAAGCTCCCCTGGGTGGTTTGGAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGACGCTGGCAACAGGGAAGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 735 0.4245 MGEGEAKVMVPESVVKKEKRNEEWALAKKQQLEAAKKKRFETRKLIFSRAKQYAKEYEEQQKELVRLKREAKLRGGFYVDPETKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKVNKQRIALTDNSIIEQTLGKHGIICIEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00459 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
Lapu9g00459 244 NCBIfam 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lapu9g00459 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Lapu9g00459 244 Gene3D - 85 189 IPR036919 -
Lapu9g00459 244 Gene3D - 190 244 IPR036919 -
Lapu9g00459 244 PANTHER 60S RIBOSOMAL PROTEIN L7 8 244 IPR039699 -
Lapu9g00459 244 Coils Coil 50 74 - -
Lapu9g00459 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
Lapu9g00459 244 FunFam 60S ribosomal protein L7 190 244 - -
Lapu9g00459 244 FunFam 60S ribosomal protein L7 85 189 - -
Lapu9g00459 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Lapu9g00459 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00459 Lapu-Chr9 4974845 4978094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00459 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.607 3.43e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00459 K02937 - gmx:100500011 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00459 9 4974845 4978094 Lapu9g00459 9 4974845 4978094 ECH