Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00458 ATGAGTAGTTTCCTGAACGGTGCTTCGCCGATGCGGCAAGGGACGGAGAGTGATATCGAGGCTGGTCCTGGTCCTGCCACTCGCCGCTCCACTGACCTAGATGACGGAGATTTATCCGATCCATTTGATATTGCCAGAACAAAGAACGCTTCTATAGAACGTCTCAGGCGCTGGAGGCAAGCAGCGCTTGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAACAAATATTGAGAAAGATTAGAGCGCATGCACAAGCCATTAGAGCGGCTTATCTTTTCAAAGCAGCTGGTGGGGTGCCAGGAAGTGGGGTGCCAGGAAGTGAACCTATTAAACCTCCCCCGACCCCTATTGCTGGTGAATTTCCAATTGGACAAGAGCAACTTGCTTCTATTTCAAGGGAGCATGACACTGCTGCTCTGCAACAATATGGAGGGGTTCTTGGACTTTCAAATTTGTTGAAGACCAATTTAGAGAAGGGAATTCATGGTGATGATGCTGATTTACTAAAACGTAGGAATTCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGAGGTTTTCTGATGTTTATGTGGGATGCTTGCAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCTGCAGCTTCACTGGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGTGACCTAAATGAAGAGAAGAGAAATATACACCTTGAGGTTATTCGAGGTGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATCCTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCTGATGGCAGTGGCACTATGCTGGTCACTGGTGTTGGTATCAATACTGAATGGGGGCTTCTAATGGCTAGCATCTCAGAAGATACCGGGGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATTGGCATTGTTGGACTCTCTGTTGCTGTTGTCGTCCTGGTTGTGCTACTGGCTAGATATTTCTCTGGGCATACTGAAAACCCGGATGGTTCGGCTCAATTTAAAGCTGGCAAGACTAAAGTCGGTGATGCTGTTGATGGTGCAATTAAGATAGTAACTGTTGCGGTCACCATCGTCGTGGTTGCAGTTCCGGAGGGGCTCCCATTAGCAGTTACTTTAACGCTGGCCTACTCGATGAGGAAAATGATGGCAGATAAAGCATTGGTAAGGAGGCTTTCTGCCTGTGAGACCATGGGTTCTGCCACAACCATATGTAGTGATAAGACTGGTACATTGACTATGAATCAGATGACCGTGGTTGAGGCCTATGCTGGGGGTAAGAAAATTGATCCTCCTCACAAGTTGGAGAATCCTATGCTTCGCTCCCTGCTCATTGAGGGTGTTGCACTGAACACTAATGGTAGTGTTTATGCAGCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATACAGCTTGGGATGAATTTTACGGCTGCTAGATCTGAATCATCAATTATTCATGTTTTCCCGTTCAATTCAGAGAAAAAAAGAGGCGGTGTTGCATTACAAACGGCTGACTCTAACATCCATATACACTGGAAAGGTGCTGCCGAGATAGTCCTAGCCTGCTGTACAGGCTATATTGATGCAAACGACCAGTTGGTGGGAATGGATGAGGAGAAGATGTCATTTTTCAAGAAGGCTATTGAGGACATGGCTGCTGATAGTCTACGTTGTGTTGCCATCGCATATAGATCATATGAAAAGGAAAAAGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCTGAGGATGATCTTATTTTATTGGCTATTGTTGGTCTTAAGGATCCTTGTCGACCTGGTGTAAAAGATGCAGTGCTACTTTGTCAAAAAGCTGGGGTTAAGGTGAAAATGGTCACTGGTGACAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATATGCTGATGCTACAGAACCAAACATCATTGAAGGAAAAACATTTCGTGGCTTATCAGATACACAGAGAGATGAAATTGCTGATAGGATTTCGGTCATGGGACGTTCATCTCCCAATGACAAACTATTGCTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTTGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCATGAGGCGGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTCAGATGGGGTCGATCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTTTAGTGATAAATGTTGTTGCTGCAGTTTCTACTGGTGATGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGACACTCTGGGAGCACTAGCCCTGGCAACGGAACCACCAACTGATCACCTCATGGATCGATCTCCAGTTGGTCGAAGAGAGCCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCGATGTACCAAGTGTCTGTCTTGCTTGTACTCAATTTCCGAGGTAGAAGCATACTGGGTTTGAGCCATGACAACAATGTGCATGCAATCAAAGTGAAAAACACTTTGATATTTAACGCATTTGTTCTCTGTCAAATATTTAATGAATTTAATGCTCGAAAGCCAGATGAATACAACATATTTAAAGGAGTCACGAAAAACTACCTCTTTATGGGTATAATTGGATTAACTCTTGTGCTTCAGATTGTCATTATCGAATTTCTGGGCAAGTTTACGAAAACAGTGAGGTTAAATTGGAAGCAGTGGCTCATCTGTGTCATTATTGGATTCATTAGTTGGCCTCTTGCTGTGATTGGGAAATTGATACCGGTGCCAACTACCCCTATCAATAATGTTTTTTCGAAATGTGGAGCTTCTAGAAGGAAGGAACCTGAGGAATCTTAG 3270 0.4287 MSSFLNGASPMRQGTESDIEAGPGPATRRSTDLDDGDLSDPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGVPGSGVPGSEPIKPPPTPIAGEFPIGQEQLASISREHDTAALQQYGGVLGLSNLLKTNLEKGIHGDDADLLKRRNSFGSNNYPRKKGRGFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLVVLLARYFSGHTENPDGSAQFKAGKTKVGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKIDPPHKLENPMLRSLLIEGVALNTNGSVYAAEGANDVEVSGSPTEKAILHWGIQLGMNFTAARSESSIIHVFPFNSEKKRGGVALQTADSNIHIHWKGAAEIVLACCTGYIDANDQLVGMDEEKMSFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDDLILLAIVGLKDPCRPGVKDAVLLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSYADATEPNIIEGKTFRGLSDTQRDEIADRISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSTGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLSHDNNVHAIKVKNTLIFNAFVLCQIFNEFNARKPDEYNIFKGVTKNYLFMGIIGLTLVLQIVIIEFLGKFTKTVRLNWKQWLICVIIGFISWPLAVIGKLIPVPTTPINNVFSKCGASRRKEPEES* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00458 1089 Gene3D - 493 847 IPR023214 -
Lapu9g00458 1089 FunFam Calcium-transporting ATPase 251 372 - -
Lapu9g00458 1089 Pfam Cation transporting ATPase, C-terminus 887 1064 IPR006068 -
Lapu9g00458 1089 Gene3D - 506 702 IPR023299 GO:0000166
Lapu9g00458 1089 Pfam Ca2+-ATPase N terminal autoinhibitory domain 38 82 IPR024750 GO:0005516
Lapu9g00458 1089 FunFam Calcium-transporting ATPase 506 702 - -
Lapu9g00458 1089 Pfam haloacid dehalogenase-like hydrolase 493 816 - -
Lapu9g00458 1089 CDD P-type_ATPase_Ca_PMCA-like 178 935 - -
Lapu9g00458 1089 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Lapu9g00458 1089 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Lapu9g00458 1089 FunFam Calcium-transporting ATPase 695 847 - -
Lapu9g00458 1089 FunFam Calcium-transporting ATPase 50 106 - -
Lapu9g00458 1089 MobiDBLite consensus disorder prediction 1 42 - -
Lapu9g00458 1089 FunFam Calcium-transporting ATPase 9 plasma membrane-type 350 520 - -
Lapu9g00458 1089 Gene3D - 50 105 - -
Lapu9g00458 1089 Gene3D - 204 1056 - -
Lapu9g00458 1089 Gene3D - 177 372 - -
Lapu9g00458 1089 PANTHER CATION TRANSPORTING ATPASE 101 1066 - -
Lapu9g00458 1089 Pfam Cation transporter/ATPase, N-terminus 155 221 IPR004014 -
Lapu9g00458 1089 Pfam E1-E2 ATPase 274 474 - -
Lapu9g00458 1089 FunFam Calcium-transporting ATPase 204 261 - -
Lapu9g00458 1089 SUPERFAMILY Calcium ATPase, transduction domain A 274 369 IPR008250 -
Lapu9g00458 1089 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Lapu9g00458 1089 PRINTS P-type cation-transporting ATPase superfamily signature 826 838 - -
Lapu9g00458 1089 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Lapu9g00458 1089 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Lapu9g00458 1089 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Lapu9g00458 1089 PRINTS P-type cation-transporting ATPase superfamily signature 802 821 - -
Lapu9g00458 1089 FunFam Calcium-transporting ATPase 819 1068 - -
Lapu9g00458 1089 SFLD p-type atpase 478 854 IPR044492 -
Lapu9g00458 1089 NCBIfam HAD-IC family P-type ATPase 769 882 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu9g00458 1089 NCBIfam HAD-IC family P-type ATPase 437 520 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu9g00458 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1066 IPR023298 -
Lapu9g00458 1089 NCBIfam calcium-translocating P-type ATPase, PMCA-type 144 1066 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lapu9g00458 1089 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Lapu9g00458 1089 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Lapu9g00458 1089 PRINTS Sodium/potassium-transporting ATPase signature 613 631 - -
Lapu9g00458 1089 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 707 IPR023299 GO:0000166
Lapu9g00458 1089 SUPERFAMILY HAD-like 494 907 IPR036412 -
Lapu9g00458 1089 SFLD C1.7: P-type atpase like 478 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00458 Lapu-Chr9 4936698 4957936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00458 1 1073 Primary Pumps ATPases AT5G57110 74.767 0.0 1608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00458 K01537 - gmx:100792945 1923.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00458 9 4936698 4957936 Lapu9g00458 9 4936698 4957936 ECH
Lapu3g00566 3 5736286 5765954 Lapu9g00458 9 4936698 4957936 PCT