Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00448 ATGGAAGATGATGAGGCATGCATCACCAGTCTAAGCCTTGGACTAGGAATGGGGGGACATGTGCCAAAGAAGGAGAAGCAGAAACTCCCTTGCTTCGACCTAACGTTTGAGATTTGTCCTAAGGGGGAGCAAACCATTCACGTGGATCAACCACAACACCACCAACAACTTCATGATGATAAGGCAAAAGGGTTGCTGTGTTTGAAGCACCCCCATGAAAATAACAGCCCTGATAGCAGCAACAATAGCAGTAACGGCAGCAGAAAGAAACTGAAGCTTTCAAAGGAGCAATCAGCCACCCTTGAGGATATTTTCAAGCTGCACAGCACTCTTAACCCCGCACAGAAGCAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGGCAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACAGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGACCAAAACCATTGTACATTCAACTCTCAAAGGCCACAACTTTGAGCATTTGTTCATCGTGCGAGAAAGAATTGAAGCCCAATGAAGGGAACAAAGGAGGCATTTCCGATGTGGTCCGAAACAGCAGCCACAAATTGCAGAACAGCGTAGGGGTAAAGGGCATTTAG 705 0.4582 MEDDEACITSLSLGLGMGGHVPKKEKQKLPCFDLTFEICPKGEQTIHVDQPQHHQQLHDDKAKGLLCLKHPHENNSPDSSNNSSNGSRKKLKLSKEQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPKPLYIQLSKATTLSICSSCEKELKPNEGNKGGISDVVRNSSHKLQNSVGVKGI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00448 234 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Lapu9g00448 234 Gene3D - 66 143 - -
Lapu9g00448 234 SMART halz 144 187 IPR003106 GO:0006355|GO:0043565
Lapu9g00448 234 Coils Coil 143 177 - -
Lapu9g00448 234 MobiDBLite consensus disorder prediction 68 93 - -
Lapu9g00448 234 SMART HOX_1 86 148 IPR001356 GO:0003677
Lapu9g00448 234 SUPERFAMILY Homeodomain-like 71 145 IPR009057 -
Lapu9g00448 234 CDD homeodomain 88 145 IPR001356 GO:0003677
Lapu9g00448 234 MobiDBLite consensus disorder prediction 73 88 - -
Lapu9g00448 234 Pfam Homeobox associated leucine zipper 144 177 IPR003106 GO:0006355|GO:0043565
Lapu9g00448 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 205 - -
Lapu9g00448 234 Pfam Homeodomain 88 142 IPR001356 GO:0003677
Lapu9g00448 234 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00448 Lapu-Chr9 4819455 4820611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00448 78 202 Homeobox Transcription Factor Family AT3G60390 68.000 2.55e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu9g00448 Homeodomain 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00448 K09338 - gmx:100790522 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00553 3 5617394 5618566 Lapu9g00448 9 4819455 4820611 PCT