Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00444 ATGATACCAACTTATCGTTATTCAGTCTCAATAGATCTTAATGAAGATCATTCACACACACTCTTCAGTACAAACCATCAAGCCTCTTCTTCATCATCTTCTTTTATATCTAATTCTATTCTCTTCAACCTAGATCAAGATCGAGGAGAGTTTTGCTACTGTCAATCAAAACATTTACAAAGTGACGAAGAGGTCCAGAAGATTGTTCGTTCCGGTGGATCATGGGATCATCCAGTAGAAAAGATTGAAAAGAGTAGTGATCTCAAGCTGAGAGTTTGGAAGAAAGAAGAGGGGTGTGAAAATCTTCAAGGTGAAGATAGTTCAAGAAAGTTGATGCCTTCAAAGATGAGAATGCGGAGGATGATGTCAGATCACAGTGGTTCTGATAGAGCTGACATCTCTAGCTCTAAGTATATCAAGTATGAAGAGAAAAATCAACCACTGTCACCGCTAGTAACTGATGATAGTAACTACAATTCTTCCTCAAACCAGAACAATGTCACTGCTAGGGTTTGTTCTGATTGCCACACCACTAAAACCCCTCTCTGGAGGAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGGCGCGCAATGGCTGCGTCTGCAACAACAGCAAATGGAAGGAATCTGGTGGAGGCTGAGAAATCTGAGATGAAGAAGGGGAACAAGTTGCAGAGAAAAGGAGTGAAGCCCAAAGCTGAGGGTGCACCGGTACTGTTGAAAAAGAAGCCTAAACCTGCCAAGCATAAAAAGAGGTTGGGTGCTTTTGAGGATTTGACAGTAAGATTGAATAAGAACTTGGCTCTTCAACAAGTTTTCCATCAGGATGAGAAAGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGACTACTTCATGGTTTTCCCTCAGATCGTTATATCACTTAG 939 0.4153 MIPTYRYSVSIDLNEDHSHTLFSTNHQASSSSSSFISNSILFNLDQDRGEFCYCQSKHLQSDEEVQKIVRSGGSWDHPVEKIEKSSDLKLRVWKKEEGCENLQGEDSSRKLMPSKMRMRRMMSDHSGSDRADISSSKYIKYEEKNQPLSPLVTDDSNYNSSSNQNNVTARVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKARRAMAASATTANGRNLVEAEKSEMKKGNKLQRKGVKPKAEGAPVLLKKKPKPAKHKKRLGAFEDLTVRLNKNLALQQVFHQDEKEAAILLMALSYGLLHGFPSDRYIT* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00444 312 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 12 304 - -
Lapu9g00444 312 ProSiteProfiles GATA-type zinc finger domain profile. 166 202 IPR000679 GO:0006355|GO:0043565
Lapu9g00444 312 MobiDBLite consensus disorder prediction 144 165 - -
Lapu9g00444 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 209 - -
Lapu9g00444 312 CDD ZnF_GATA 171 219 IPR000679 GO:0006355|GO:0043565
Lapu9g00444 312 SMART GATA_3 166 217 IPR000679 GO:0006355|GO:0043565
Lapu9g00444 312 Gene3D - 167 262 IPR013088 GO:0006355|GO:0008270
Lapu9g00444 312 ProSitePatterns GATA-type zinc finger domain. 172 197 IPR000679 GO:0006355|GO:0043565
Lapu9g00444 312 MobiDBLite consensus disorder prediction 149 165 - -
Lapu9g00444 312 Pfam GATA zinc finger 172 205 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00444 Lapu-Chr9 4783822 4785974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00444 165 304 C2C2-Gata Transcription Factor Family AT4G26150 44.654 5.43e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu9g00444 GATA 4.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00444 - - gmx:100780875 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00544 3 5547394 5549228 Lapu9g00444 9 4783822 4785974 PCT