Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00433 ATGCACCCCATGGAAAATGTCTTCTCTCTCCCTGTAGCCGCCAGGGCTGATTTTATCCAATTTCTGGTGCAGTCTTTTGGCTGCAGTTACATTTGTCTGTGGGCATATGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACGACCAACCAGGCTCTAGTTTTGGAACTCTGGCACAACAACTTTTCAGTCAGTTCAGGACTTTAACATTTGATGTTAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTAAGACTAGCATCAACAGAAATACAAACACAATTCTTTCAGGAGGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACGGCACTTAGGAGTTTGTTTCCTGGAGAATTTTCTACTACACAGTCCCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTATTCCAGGCACTTCTCAATCCCACTTTCCTGAGACACTCGGAGGAGCAAGAGTGCCCCCAATGCAGCCAGTGCCAAACACAGCCACTAGTCCTCACCAACAAGCCATTCAAGCATTGGCACAAGCCCCTCTAACCCAATTCCCCACACGAGAAAGTGAACATGATGCAATCATGAGAGCAATCCTCCATGTCGTATCCCCAACTTCTCATCAGCACCAAAACTTGCCTTTTGCTCCAGTGGTCCATCCAGATGCTAGTGCTTTCCAGAGGTATAGATCAGACATTGGTCCCAATATGGCCTCCAATTTCAGAAAGCAAAGCTTCATGAAGAGATCTTTTGCATTCTTTAGAAACTTAAATTTTATGAGAATGAGAGAACGCATCCAAGCAACATCCCGTCCCACTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTTAGAGCACTACTTCCTCCGGGAACAAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTCTCTAATGGCTGAAGTTGATCAACTAAGCAAAAGAAATAAGGGGTTGTTGACATCACTTTTGCCATCCAAAGAACCTGCAACAGAAGAAACCAAGGCTAGATTATCTCCAAATGAAAGTTTAAGTGTCCGAGTTTCAAAAGTACCCGAATCAAGCTCGTCACAAGAGCGAATGGTGGACTTGCAAGTGAACGTGAGAGGACAAGTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCTTAAAACAGTGTCTCAACGTGACTTTGGTTTCCATGGACGCAAACACCCACATTGCAGAAGGGAATAATGCTCTTCATCAACTAACCTTCAGATTAAGGATTATTCAGGGGAGTGAATGGGACGAGTGTGCCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTTCCAAGAGGAT 1563 0.4325 MHPMENVFSLPVAARADFIQFLVQSFGCSYICLWAYDSISPNRLCFLDGIYNVRNDQPGSSFGTLAQQLFSQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGEFSTTQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTSQSHFPETLGGARVPPMQPVPNTATSPHQQAIQALAQAPLTQFPTRESEHDAIMRAILHVVSPTSHQHQNLPFAPVVHPDASAFQRYRSDIGPNMASNFRKQSFMKRSFAFFRNLNFMRMRERIQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSSLMAEVDQLSKRNKGLLTSLLPSKEPATEETKARLSPNESLSVRVSKVPESSSSQERMVDLQVNVRGQVSQIDLSICLLEFLKQCLNVTLVSMDANTHIAEGNNALHQLTFRLRIIQGSEWDECAFEEAVRRVVADLAQFQED 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00433 521 CDD bHLH_AtbHLH_like 336 388 IPR045239 -
Lapu9g00433 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 398 IPR036638 GO:0046983
Lapu9g00433 521 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 514 IPR044658 -
Lapu9g00433 521 MobiDBLite consensus disorder prediction 411 427 - -
Lapu9g00433 521 MobiDBLite consensus disorder prediction 400 427 - -
Lapu9g00433 521 SMART finulus 337 386 IPR011598 GO:0046983
Lapu9g00433 521 Gene3D - 330 401 IPR036638 GO:0046983
Lapu9g00433 521 Coils Coil 337 357 - -
Lapu9g00433 521 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Lapu9g00433 521 Coils Coil 370 390 - -
Lapu9g00433 521 MobiDBLite consensus disorder prediction 160 184 - -
Lapu9g00433 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00433 Lapu-Chr9 4586311 4590175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00433 15 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.121 1.10e-99 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu9g00433 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00433 - - gmx:100807098 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00433 9 4586311 4590175 Lapu9g00433 9 4586311 4590175 ECH
Lapu3g00529 3 5399514 5403508 Lapu9g00433 9 4586311 4590175 PCT