Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00427 ATGAACTTGAGAAGTGGGTTCATGGATTCCAACGATGTTACCAACAGCAGTGGCGAGGCCAATTCCAATGCTTCAGAAGTCACGCTGATGAGGCTTCTCTCGGAGCATCTGGGGTCAATCCTGGAAGGCGGGGTTGACTTTTTCTCCGACGCCATGATTGTGGCCGGCGACGGCCGGGAAGTGGCCGTGCACCGGTGCGTTCTGGCGTCGAGGAGTGGCTTCTTCAAGACCGCGTTCGCCGGTGGCAGCGTGCTCCGGTTGAAGGAAGTGGCCAATGACTACGATGTTGGTTTGGAAGCACTTGGCATAGTTCTGGCTTATTTGTACAGTGGGAGGGTGAAAGCTTTGCCCCAAGGTGGTGTTTGTGAGTGTGTGGATGACGTTTGTTGTCATTTTGGGTGTAGACCTGCTGTGGATTTCTTGCTTCAGCTCCTCTATGTTTCTTCCACTTTTCAACTTTCTGAGTTGGTTGCTCTTTATCACGTATATTTTGTTTACTTGCAGGACCATCTACTAGGCATTCTTAATAAGGTGGTGATAGATGAGATTTTTGTTGTTCTACTAGTCGCAAACATATGTGGCCAAATGTGTGATGGACTGCTAGCAAGGTGCACTGAGATGATAGTTAAATCTGATGCTGATATCACCACTCTTGAAAAGGAACTTCCTCTATCTTTGGTGGAACAAATCATGAATAAACAAAGAGAACGTGGCATGTACATGCCCGGAAACTTCTATTTTCCTGACAAACATGTCAACAGAATACACAGGGCTTTGGATTCAGACGATGTGGAATTGGTAAGATTGCTTTTGAAAGAGGGGTACACCACTCTTGATGATGCCTATGCACTTCATTATGCTGTTGCATACTGTGATGTGAAGACCACCACTGAGCTTCTTGATCTTGGTCTTGCTGATGTCAACAACAAAAACCATAGGGGCTATAGTGTGCTGCATGTTGCTGCAATGAGGAAAGAGCCTAAGATAATAGTTTCTCTCTTGACAAAGGGGGCACAGCCTTCTGATCTCACTTTGGATGGTAGAAATGCCCTTCAGATTTCAAAGCGTCTCACCAAAGCTTCGGATTATTACAATGTTACTGAGGAAGGAAAGGTGTCATGCAATGACCAATTGTGCATAGAGATATTGGAGCAAGCTGAGAGAAGGGAACCTTTACTTGGAGAGGCATCACTTTCTCTTGCTCTGGCAGGGGATGATTTGCGCATGAAATTGTTGTACCTTGAAAATAGAGTTGGACTGGCGAAAGTGTTGTTTCCCATGGAAGCAAAGGTTATAATGGACATAGCTCAAATTGATGGCACATCTGAATTTCCATCAGCTGACATCTGCTGTCCAAATATTAACGATAGTGAAAGGACAACCGTGGACTTAAACGATGCACCTTTCAAAATGAAGGAGGAGCATCTTGTTAGGTTGAGAGCACTGTCTAGGACTGTGGAGTTGGGGAAACGCTTCTTCCCTCGTTGCTCAGAAGTGTTGAATAAGATCATGGATGCTGATGACCTAACTCTACTTCGTATGGATGATGACAGTCCTGAAGATCAACTAAGGAAGACAAGGAGGTATGAGGAGCTTCAAGAAGTTCTGAAGAAGGTCTTCAATGAGGACAAGGAGGAGTTTGATAGGTCTGCCATGTCATCATCATCATCATCCTCTTCCACATCAATGGGAGTAGTGAGACCTAATGCCAATCTAACCATGAAGAAC 1728 0.452 MNLRSGFMDSNDVTNSSGEANSNASEVTLMRLLSEHLGSILEGGVDFFSDAMIVAGDGREVAVHRCVLASRSGFFKTAFAGGSVLRLKEVANDYDVGLEALGIVLAYLYSGRVKALPQGGVCECVDDVCCHFGCRPAVDFLLQLLYVSSTFQLSELVALYHVYFVYLQDHLLGILNKVVIDEIFVVLLVANICGQMCDGLLARCTEMIVKSDADITTLEKELPLSLVEQIMNKQRERGMYMPGNFYFPDKHVNRIHRALDSDDVELVRLLLKEGYTTLDDAYALHYAVAYCDVKTTTELLDLGLADVNNKNHRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRNALQISKRLTKASDYYNVTEEGKVSCNDQLCIEILEQAERREPLLGEASLSLALAGDDLRMKLLYLENRVGLAKVLFPMEAKVIMDIAQIDGTSEFPSADICCPNINDSERTTVDLNDAPFKMKEEHLVRLRALSRTVELGKRFFPRCSEVLNKIMDADDLTLLRMDDDSPEDQLRKTRRYEELQEVLKKVFNEDKEEFDRSAMSSSSSSSSTSMGVVRPNANLTMKN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00427 576 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Lapu9g00427 576 Pfam Ankyrin repeats (3 copies) 256 340 IPR002110 GO:0005515
Lapu9g00427 576 CDD BTB_POZ_NPR_plant 31 175 - -
Lapu9g00427 576 Gene3D - 207 387 IPR036770 -
Lapu9g00427 576 MobiDBLite consensus disorder prediction 1 20 - -
Lapu9g00427 576 SMART BTB_4 49 168 IPR000210 GO:0005515
Lapu9g00427 576 Gene3D Potassium Channel Kv1.1; Chain A 15 206 IPR011333 -
Lapu9g00427 576 Pfam NPR1/NIM1 like defence protein C terminal 355 559 IPR021094 -
Lapu9g00427 576 SUPERFAMILY POZ domain 46 160 IPR011333 -
Lapu9g00427 576 PANTHER REGULATORY PROTEIN NPR3 7 569 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lapu9g00427 576 Pfam BTB/POZ domain 47 115 IPR000210 GO:0005515
Lapu9g00427 576 ProSiteProfiles BTB domain profile. 49 117 IPR000210 GO:0005515
Lapu9g00427 576 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 224 377 - -
Lapu9g00427 576 MobiDBLite consensus disorder prediction 551 576 - -
Lapu9g00427 576 SMART ANK_2a 313 342 IPR002110 GO:0005515
Lapu9g00427 576 SMART ANK_2a 250 278 IPR002110 GO:0005515
Lapu9g00427 576 SMART ANK_2a 279 309 IPR002110 GO:0005515
Lapu9g00427 576 MobiDBLite consensus disorder prediction 545 576 - -
Lapu9g00427 576 SUPERFAMILY Ankyrin repeat 250 356 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00427 Lapu-Chr9 4538135 4545325 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu9g00427 NPR1_like_C 1.9e-85 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00427 K14508 - gmx:100800032 877.47