Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00423 ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTTGGCCGTAAGATCGGTAGCGGATCGTTTGGAGAGATCTATTTAGGTACTAACATTCAAAATAATGAAGAGGTTGCAGTCAAGCTTGAAAATGTGAAGACAAAGCATCCTCAGTTGCTATATGAGTCCAAGTTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCAGATGTTAGATGGTTTGGAGTGGAGGGAGAGTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGCAGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTTGTTCATTGTAAATCTTTCCTACATCGGGATATCAAACCAGATAATTTCCTTATGGGATTGGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTTGGTTTGGCAAAGAAATATAGGGATAGTTCGACCCATCAACACATTCCCTACAGAGAAAATAAGAATTTAACTGGGACTGCTAGATATGCAAGTATGAATACCCACCTTGGCATTGAGCAGAGTCGAAGAGATGATTTGGAGTCTCTTGGTTATGTCTTGATGTATTTCCTCAGGGGAAGTCTCCCTTGGCAAGGACTTAAAGCGGGAACCAAGAAACAGAAGTATGAGAGAATCAGTGAAAAAAAGGTTTCTACCTCTATTGAGGCATTGTGTCGAGGTTATCCATCAGATTTTGCATCTTACTTTCATTACTGCCGCTCTTTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAGAGAATATTTCGCGACCTATTTATTAGAGAAGGATTTCAGTTTGATTATGTGTTTGATTGGACAATCTTGAAGTATCAGCAATCACAGCTAGCTGCTCCTCCTGCACGGGCCGTTGGTCCATCTGCTGGAACTAGTTCTGCAATGCCCCCAGCTGTTGCTAATGCTGATAGACAAACAGGAGAGGAAGAAGGACGGCCTCCTGGTCTGATTTCAGGGGATTCCACAAGGAGAAGAATGTCAGGGACCATCTCAAACTCTGTAAATATTTCTAAACAGAAAAATCCAGTCACCATGGATGCTGCTCTCAATAAGGAAGCAATGTTATCAAGGCCTAATGTCTTGGGTCAGTCAAGTGGATCGAGGCGAGCTCCTGTTTCCGGTAGCCGTGATGCATTTTCTGGTAGTGATTTAGATCATCGTTCTCGTGCTACTGAGGCTAACCCTGGAACAGTGCGCAAAATATCATCTGGGAGAAATGCTTCTCATATCAAGAACTATGAAAGTGCTGTCAAGGGCATTGAAGGTTTGCAATTGGAAAATGATAAGAGGGCACATTATTAA 1371 0.4252 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQNNEEVAVKLENVKTKHPQLLYESKLYRVLQGGTGIPDVRWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHCKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPSDFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLAAPPARAVGPSAGTSSAMPPAVANADRQTGEEEGRPPGLISGDSTRRRMSGTISNSVNISKQKNPVTMDAALNKEAMLSRPNVLGQSSGSRRAPVSGSRDAFSGSDLDHRSRATEANPGTVRKISSGRNASHIKNYESAVKGIEGLQLENDKRAHY* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00423 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lapu9g00423 456 FunFam Casein kinase I isoform delta-like 1 308 - -
Lapu9g00423 456 CDD STKc_CK1_delta_epsilon 8 282 - -
Lapu9g00423 456 PANTHER CASEIN KINASE-RELATED 9 357 - -
Lapu9g00423 456 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Lapu9g00423 456 MobiDBLite consensus disorder prediction 380 394 - -
Lapu9g00423 456 MobiDBLite consensus disorder prediction 379 431 - -
Lapu9g00423 456 MobiDBLite consensus disorder prediction 305 365 - -
Lapu9g00423 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00423 456 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00423 456 MobiDBLite consensus disorder prediction 345 365 - -
Lapu9g00423 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lapu9g00423 456 FunFam Putative Casein kinase I 1 85 - -
Lapu9g00423 456 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lapu9g00423 456 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00423 Lapu-Chr9 4497917 4504997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00423 7 223 EF-hand Containing Proteins AT2G17890 25.333 9.33e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lapu9g00423 Pkinase 2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00423 K02218 - gmx:100786777 857.44