Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00413 ATGAAGAAAGGGAGCTTAAGCCCCGGTCTCAAACTCACTGTTCCTGCATCTAATCGGGGTTCATTTGCCAAGTTTTTGTCTGAGTCTGAAAGTGAAACGTTCAAGGCAGGGGACTTGCTTGTCAACAACGAAGGAGTTCGAGTTGTTTCTGAGAAGGATGTCGAAGCTCCACCACCAATCACGCCACTAGACAACCAGTTAAACCTGGCAGATATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTGCAATTGGTACAACACAAATGGACTAATCAATTTTTTGCATTAAAGGAAATTCAAATGAATATTGAGGAGCCTATTCGCAGGCGGATAGCACTAGAGCTAAAGATTAATCAATCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTCTATCATAACGGTGTCATATCAATCGTATTAGAGTACATGGACGGAGGGTCCTTAGAAGATCTTCTGAACAAAGTTAAGACAATTCCAGAGTCATATCTTGCTGCCATCTGCAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAAATACATTATCCACAGGGACTTAAAACCTTCTAATCTGCTGATAAACCATAGAGGGGAGGTAAAGATTACTGACTTTGGAGTAAGCATAATCATGGAAAATACATCTGGTCAAGCAAATACTTTCACTGGCACATACAGCTATATGTCTCCAGAGAGAATCATTGGTAACCAGAATGGCTACGACTACAAAAGTGATATATGGAGTTTGGGACTGATTTTGCTCAAGTGTGCGACAGGGAAGTTTCCATATACTCCACCAGATCAACGCGAAGGATGGGAAAATCTTTTCCAGCTTATTGAAGTCATTGTGGAAAAACCTTCCCCCAGTGCACCACCAGATGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAAGGGATAGACCGTCTGCTCGGGACCTTATAAAACATCCTTTTATCAACTTGTATGAGGACTTGAATGTGGATCTTTCAGCTTATTTCGCCAACGCAGGATCTATACTTGCAACCATATAG 1077 0.4095 MKKGSLSPGLKLTVPASNRGSFAKFLSESESETFKAGDLLVNNEGVRVVSEKDVEAPPPITPLDNQLNLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIQMNIEEPIRRRIALELKINQSAQCPYVVVCYQSFYHNGVISIVLEYMDGGSLEDLLNKVKTIPESYLAAICKQVLKGLMYLHHEKYIIHRDLKPSNLLINHRGEVKITDFGVSIIMENTSGQANTFTGTYSYMSPERIIGNQNGYDYKSDIWSLGLILLKCATGKFPYTPPDQREGWENLFQLIEVIVEKPSPSAPPDDFSPEFCSFISACLQKNPRDRPSARDLIKHPFINLYEDLNVDLSAYFANAGSILATI* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00413 358 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Lapu9g00413 358 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00413 358 Pfam Protein kinase domain 74 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00413 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 16 336 - -
Lapu9g00413 358 SUPERFAMILY Protein kinase-like (PK-like) 70 340 IPR011009 -
Lapu9g00413 358 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Lapu9g00413 358 Gene3D Phosphorylase Kinase; domain 1 50 151 - -
Lapu9g00413 358 FunFam Mitogen-activated protein kinase kinase 6 153 353 - -
Lapu9g00413 358 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g00413 358 CDD PKc_MAPKK_plant_like 70 338 - -
Lapu9g00413 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Lapu9g00413 358 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00413 Lapu-Chr9 4366865 4371906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00413 28 355 MAP Kinase Kinase Gene Family AT4G26070 64.634 4.02e-163 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lapu9g00413 Pkinase 2.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00413 K20603 - gmx:100789241 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00413 9 4366865 4371906 Lapu9g00413 9 4366865 4371906 ECH
Lapu3g00514 3 5235234 5240448 Lapu9g00413 9 4366865 4371906 PCT