Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00406 ATGCTCACGTGCATAGCACGTCCCAAGAAACTCGACTCGGCCAGCGACGATCCGAGTTCGCGCGCCGCCAAATCGCTAACGTGTCAGCTCAAGGAGATGGCGTTGAAGGCGTCGGGGTCGTACAAGCAGTGCGGTCCGTGCGCGCCTCCGCAGAGTCGACTAAGTCGCGGTAGCGAGTCGGATTCGGAGTCGTCGCGGCGGCGGTGGGGGAAGGAGATGGAGGCACGGCTGAAGGGAATATCGAGCGGCGAGGGGACGCCGAGCTCGAGCGGGAGGAGAATGGTGGTGGTGCTGGAAGAGGAGGCGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCACGTTCGTGTCTCTTCCGCGCGGCGGGAACCATCTCAAACGGATTCGGTTCAGCCGTGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCGGAGAACTACGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTCCCTCTTCCAACTCCGCCAAGGTCTGAAGACGAGAGTTCGAAGCGTGAATCAATAGAAGAGATCCCTGTGACACCTCCACTGAGCAGGGAAAGGCCACCTTGTAATTTATTCCGTGCAGGAGGAGGAGGGGTGGCAATGGGGTACTCATCTTCTGATTCGTTTGATCATCAGTCAATGCAATCCCGGCATTACTATGACCCGAGTGGCATGAACTCAACCCCAAAGGTGTCCACCATTAGTGCTGCTGCCAAGACAGATATCTCATCAATGGATGCTGATGCTTCTATTAGAAGTAGCTCATCTAGAGAAGCTGATCGCTCTGGCGATCTATCAATCAGCAATGCCAGTGACCTGGATGCTGAATGGGTTGAGCAGGATGAACCCGGGGTTTACATCACCATCAGAGCCCTCCCAGGTGGCAAAAGGGAGCTCAGAAGAGTAAGGTTCAGCCGAGAAAAGTTTGGGGAGATGTATGCTAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1035 0.5449 MLTCIARPKKLDSASDDPSSRAAKSLTCQLKEMALKASGSYKQCGPCAPPQSRLSRGSESDSESSRRRWGKEMEARLKGISSGEGTPSSSGRRMVVVLEEEAEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNLFRAGGGGVAMGYSSSDSFDHQSMQSRHYYDPSGMNSTPKVSTISAAAKTDISSMDADASIRSSSSREADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMYARLWWEENRARIHEQYL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00406 344 MobiDBLite consensus disorder prediction 170 202 - -
Lapu9g00406 344 MobiDBLite consensus disorder prediction 59 78 - -
Lapu9g00406 344 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 344 IPR044532 -
Lapu9g00406 344 MobiDBLite consensus disorder prediction 259 281 - -
Lapu9g00406 344 MobiDBLite consensus disorder prediction 39 91 - -
Lapu9g00406 344 ProSiteProfiles BRX domain profile. 289 344 IPR013591 -
Lapu9g00406 344 Pfam Transcription factor regulating root and shoot growth via Pin3 289 343 IPR013591 -
Lapu9g00406 344 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Lapu9g00406 344 MobiDBLite consensus disorder prediction 1 23 - -
Lapu9g00406 344 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Lapu9g00406 344 Pfam Transcription factor BRX N-terminal domain 24 47 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00406 Lapu-Chr9 4296284 4306484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00406 1 344 Major Intrinsic Protein MIP AT1G31880 43.158 5.12e-83 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00406 - - pvu:PHAVU_009G229100g 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00406 9 4296284 4306484 Lapu9g00406 9 4296284 4306484 ECH
Lapu3g00503 3 5137807 5143751 Lapu9g00406 9 4296284 4306484 PCT