Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00404 GATGTTCTAAGCCCTTTCACAGTGTCATCCCCTCCTCCACCCTCTTCTTCTTCTTCTTCCGACAAGAACAACAGCATGCCCATGTTGTACTACGGTCTTGTGGTGGTGGGAACCGCCGCCATAGTGCTGGCCGTATACAACCTGGTTCTCCTGAAACGCAGCCAGGCGCGGTCGCAGGCGCCTCCGGGGGGGTCGAGTTCCAATGGTTTGGGAGGAAGAAGAAGAATCGAGGGGGTTTCGGAAATAACGAGGAGCATGGAGAACCAAGAAAGACAGCTGCTGTCGAGCTTCAAGTACAAGAAAGAAGTGGTGGGAAAAGAAAGAGAGTTAGAAGAGGATTTTGAGTGCCCCGTTTGCTTATCGGTTTATGAAGAAGGTGAAGAAGTGAGGAAGCTTCCACAGTGCAAACACTGTTTCCATGTTCTTTGCATAGACATGTGGCTCTACTCTCACTTCGATTGCCCCATTTGTAGAACACCCGTTGTCGCCTCTCTCGATTCACTCCATGGCTTCATTGAATCCTCTTCCATCTGA 534 0.5037 DVLSPFTVSSPPPPSSSSSSDKNNSMPMLYYGLVVVGTAAIVLAVYNLVLLKRSQARSQAPPGGSSSNGLGGRRRIEGVSEITRSMENQERQLLSSFKYKKEVVGKERELEEDFECPVCLSVYEEGEEVRKLPQCKHCFHVLCIDMWLYSHFDCPICRTPVVASLDSLHGFIESSSI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00404 177 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 162 IPR044675 -
Lapu9g00404 177 Pfam Ring finger domain 115 158 IPR001841 -
Lapu9g00404 177 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lapu9g00404 177 CDD RING-H2_EL5-like 115 158 - -
Lapu9g00404 177 FunFam RING-H2 finger protein ATL1 74 163 - -
Lapu9g00404 177 SUPERFAMILY RING/U-box 106 164 - -
Lapu9g00404 177 MobiDBLite consensus disorder prediction 1 23 - -
Lapu9g00404 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 163 IPR013083 -
Lapu9g00404 177 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00404 Lapu-Chr9 4280159 4281124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00404 13 161 C3H Transcription Factor Family AT1G04360 30.864 2.57e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00404 - - gmx:102662517 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00500 3 5117769 5118281 Lapu9g00404 9 4280159 4281124 PCT