Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00400 ATGGCGGTGAATCTAACCGAAAACGCGATTCCGGCGATAATCAACGGCGACGTGAACGCCAAACCGGTTGTTCAGGTTCTGGACATAACATTAGTCTCTAACTCAAAAAACTCGCAGCAGCAGAGATACCGTCTTCTGCTTTCCGACGCCGTTTTGTCTCACCACGCGATGCTCGCCACTCAGCTCAACGACCGAGTCCGAACCGGTCGAGTTCAGAAGGGTTCGATTGTTCAGCTTCTCGATTATATATGCTCTCCTTTCAAGAACCGCAAGATTATTATGGTTCTAAACATGGAAACTATAATAGCTGATTTTGAGATTATTGGGAATCCGAAGCCATGTGTGGATTCAGATTTACCAACTGTAAGAGCTTCAGCTGATAACACTGTGGAGAATTTGCCCAGGAGTAATAATAGTAGTAATAATATTGGTAATTCTGCTGCTCAAAATGCAAGTCATAATAACGCCCAGAATTTCAGACCAACAATTCAACCTCCATACCAACCACCTCCAGTTTACAAAGGCCGTGGGGCGGTTATGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAGGGCTAGGGTAACTGCCAAAGGGGATCTGCGCCGCTACAATAATGCACGCGGTGATGGAAAAGTATTCTCATTTGATCTCCTGGATTCTGATGGAGGTGAAATACGAGTAACGTGTTTTAATGCTGTTGTTGATCGCTTCTATACTGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTAAAACCTGCTCAGAAAAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACAGTTGAGTTGTGCCCAGATGAGGATGATTCTATACCTAGACAGCAGTTCTCCTTCCGACCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGAGTTGTGACATCTGTGAACCCTTCTGTTCCTATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTAAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGAGAATTTTGCAACAGGGAAGGGCAACAGTTGCAAGAGATGGTAGATGCTGGGTTTTTCCCAATTTTAGCGGTCAAAGCTGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGAGTTCCCTGAGGCCAGTATCTTAAAAGAATGGTTTGATCGAGTAGGAAAAGATTCTGCTTCGCTTTCAATTTCTAAGGACGTTATTCCTGGAGGAACGAAGAATGAGGTTCGCAAAACTATATCTCAAATCAAGGATGAAGGTCTGGGACGGTCAGACAAGCCAGACTGGGTAACAATAAGGGCAACCATATCATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGTGATCGACAATGCAATAAGAAAGTGACTAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAATCAAGAATTTGATGAGTGTGATTACCGGTACCTTCTCCAAGCTCAAATTCTGGACGGCACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGTGAAGAGATTATGGAGTATTCCGCAAAGGATCTGTACTTGTTGAAACATGAACAGCAGGATGATGAGAGGTTTGGAGAAATAATCAAGAGCCGACTCTTCAAACAGTTTATCTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTCAAGATTACTGTAGTCAAGGTAGATAAGGTGAACTATTCTTCAGAGAGTCAATACATGCTTGATTCGATTTCCAAGTTTTGTAGGTAG 1902 0.4222 MAVNLTENAIPAIINGDVNAKPVVQVLDITLVSNSKNSQQQRYRLLLSDAVLSHHAMLATQLNDRVRTGRVQKGSIVQLLDYICSPFKNRKIIMVLNMETIIADFEIIGNPKPCVDSDLPTVRASADNTVENLPRSNNSSNNIGNSAAQNASHNNAQNFRPTIQPPYQPPPVYKGRGAVMKNEAPARIIPIAALNPYQGRWAIRARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYTVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQQLQEMVDAGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPEFPEASILKEWFDRVGKDSASLSISKDVIPGGTKNEVRKTISQIKDEGLGRSDKPDWVTIRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFDECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDERFGEIIKSRLFKQFIFRLKIKEELYGDEQKVKITVVKVDKVNYSSESQYMLDSISKFCR* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00400 633 CDD RPA1_DBD_C 457 630 IPR047192 -
Lapu9g00400 633 Pfam Replication protein A OB domain 311 415 IPR031657 -
Lapu9g00400 633 MobiDBLite consensus disorder prediction 128 166 - -
Lapu9g00400 633 Pfam OB-fold nucleic acid binding domain 202 285 IPR004365 GO:0003676
Lapu9g00400 633 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lapu9g00400 633 CDD RPA1_DBD_B 322 429 - -
Lapu9g00400 633 FunFam Replication protein A subunit 440 631 - -
Lapu9g00400 633 FunFam Replication protein A subunit 4 115 - -
Lapu9g00400 633 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Lapu9g00400 633 Gene3D - 441 632 IPR012340 -
Lapu9g00400 633 Pfam Replication factor-A C terminal domain 473 624 IPR013955 -
Lapu9g00400 633 Gene3D - 3 115 IPR012340 -
Lapu9g00400 633 FunFam Replication protein A subunit 187 296 - -
Lapu9g00400 633 NCBIfam replication factor-a protein 1 (rpa1) 3 630 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu9g00400 633 FunFam Replication protein A subunit 300 439 - -
Lapu9g00400 633 SUPERFAMILY Nucleic acid-binding proteins 305 432 IPR012340 -
Lapu9g00400 633 CDD RPA1_DBD_A 190 293 - -
Lapu9g00400 633 SUPERFAMILY Nucleic acid-binding proteins 454 631 IPR012340 -
Lapu9g00400 633 PANTHER REPLICATION FACTOR A 1, RFA1 201 609 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu9g00400 633 Gene3D - 187 297 IPR012340 -
Lapu9g00400 633 Gene3D - 300 438 IPR012340 -
Lapu9g00400 633 MobiDBLite consensus disorder prediction 128 162 - -
Lapu9g00400 633 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lapu9g00400 633 SUPERFAMILY Nucleic acid-binding proteins 187 301 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00400 Lapu-Chr9 4256628 4260421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00400 26 626 Core DNA Replication Machinery Family AT2G06510 69.854 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00400 K07466 - gmx:100792409 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00400 9 4256628 4260421 Lapu9g00400 9 4256628 4260421 ECH