Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00397 ATGGAAACCAAGAACTGCTGTGAAAAAGAAGGAGCATGGTCTTCTGATGAAGACCAAATTCTCTTCAACTTTGTTCAACTCAGTGGAGAAGGAAATTGGAGAGATCTTCCCCAAAGAGCTGGGTTGAAACGATGTGGTGAGAGTTGCAAACATCGATGGCTGAACTATCTCAAGCCAACCATCCCTAGAGAGAACTTTTCTTGGGATGAGCAAGAACTCATAATCAGACTGCACAAACTCTTGGGGAATAGATGGTCTATGATTGCTGGAAGATTACCAGGACGCAGTGAAGAAGAGATAAAGAAGTACTGGAATACGTATTTGAGCAAGGAGATGGAAGAAGAGAAGAAAGTTGGAAGCAGAAGTGTGAGAAGTAGCAGTAGCATGGCTAGTGTTGAATCTCCATGGTGCTCCCAAAATTACCTTCCTATCAAATCCATCCACTCTCCAAACCCTCCCATAGTTAGACCTAAAGTTGTTAGGTTAACTAGTTGTGGTGCCAAGACAGCTACTACCCAATGA 522 0.431 METKNCCEKEGAWSSDEDQILFNFVQLSGEGNWRDLPQRAGLKRCGESCKHRWLNYLKPTIPRENFSWDEQELIIRLHKLLGNRWSMIAGRLPGRSEEEIKKYWNTYLSKEMEEEKKVGSRSVRSSSSMASVESPWCSQNYLPIKSIHSPNPPIVRPKVVRLTSCGAKTATTQ* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00397 173 CDD SANT 65 108 IPR001005 -
Lapu9g00397 173 FunFam MYB-related transcription factor 9 62 - -
Lapu9g00397 173 CDD SANT 12 57 IPR001005 -
Lapu9g00397 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Lapu9g00397 173 Gene3D - 10 62 - -
Lapu9g00397 173 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 124 - -
Lapu9g00397 173 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Lapu9g00397 173 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Lapu9g00397 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lapu9g00397 173 SMART sant 62 110 IPR001005 -
Lapu9g00397 173 SMART sant 9 59 IPR001005 -
Lapu9g00397 173 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Lapu9g00397 173 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
Lapu9g00397 173 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Lapu9g00397 173 Gene3D - 64 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00397 Lapu-Chr9 4230793 4232328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00397 2 112 MYB Transcription Factor Family AT3G13540 55.652 1.93e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g00397 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00397 K09422 - gmx:778159 222.246