Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00396 ATGAACAGAAGCAACTTTTCTTTGGATGAACAAGAACTCATAATCAGACTTCATAAACTCTTGGGAAATAGATGGTCTCTGATTGCAGGAAGGTTACCTGGACACACTGAGAATGAGATCAAACACTTTTGGAATACTCATTTAAGCAAGAAAGAAGAAGAAATGCAGAGAAAGAATAAACTCCCAAGAACAAGTACTAGCATACCTCATTTTCAATATCTCAAATGCAACAAAAACTCCTTGCATGCTAGAGAAACTCCCCATCTTGTGATTAAACCTAAAGTTGTGAGGCTAACCAAGGCTGTTATGCAAGTTCATCTTCAATGA 327 0.37 MNRSNFSLDEQELIIRLHKLLGNRWSLIAGRLPGHTENEIKHFWNTHLSKKEEEMQRKNKLPRTSTSIPHFQYLKCNKNSLHARETPHLVIKPKVVRLTKAVMQVHLQ* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00396 108 ProSiteProfiles Myb-like domain profile. 1 48 IPR001005 -
Lapu9g00396 108 CDD SANT 5 48 IPR001005 -
Lapu9g00396 108 Pfam Myb-like DNA-binding domain 3 48 IPR001005 -
Lapu9g00396 108 Gene3D - 5 81 - -
Lapu9g00396 108 SMART sant 2 50 IPR001005 -
Lapu9g00396 108 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 2 65 - -
Lapu9g00396 108 SUPERFAMILY Homeodomain-like 4 51 IPR009057 -
Lapu9g00396 108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00396 Lapu-Chr9 4218801 4221971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00396 1 51 MYB Transcription Factor Family AT5G40330 70.588 6.85e-22 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu9g00396 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00396 K09422 - gmx:778159 112.464