Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00379 ATGCAGAAGAAGTCGATATTACCACTGAGCGACGCGAATGCGAACAGGAAGGGGAAGGACCTGCGCAGCAAGGAAGCGTTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTCAGGGGCATGCAATTGGACGCTATTCAGTCCGTGCTCTCAGGAAATGACTGTTTTTGTCTTATGCCAACTGGGGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAAACAGGAATTGTGCTTGTTATTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTGAAGGAGAAAGGGATTGCAGCAGATTTTCTATCCTCAACAAAAACAGCAGATGCTAAAGTAAAGATTCACGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCAGGGTTTATGTCAAAGCTGACAAAGATTTATACTAGGGGGCTGCTAAATCTCATTGCCATAGATGAGGCGCATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCGCCTACCAGATGTACCAATATTAGCTTTGACTGCTACTGCTGCGCCAAAGGTTCAGAAGGATGTAGTTGAATCCTTGCAGATGCAAAATCCATTAATACTCAAGTCTTCATTTAATCGTCCAAATATATATTATGAAGTTAGATACAAAGATCTACTGGATGATGCTTATGCTGATTTATCTAATACACTCAAATCTTTGGGAGATGTCTGTGCAATAGTGTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAACTAATCTATCTCAAAGTGGCATTTCATGTGCTGCTTATCACGCAGGATTGAATAATAAAATGCGATCTTCGGTGTTAGATGACTGGATTTCTTCTAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGCTCTGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCATTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCCGGCAGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGGTAGATGATCGCAAAAGAATGGAATTTATATTAAGTAAATCGGGGAGCAAGAAGTCACAGTCATCTAGTTCACTGGAAGAATCATCCAAAATATCCCTGAATGCTTTCAATCAGATGGTTAAATACTGTGAAGGATCTGGATGTCGCAGGAAAAAAATTCTCGAGAGTTTTGGGGAACAGGTAACTGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATGCAAACATAGTTGCCAGATGTTTAGAGGATCTCAAAACTGTTTGTGCTCTACGCCAGAAAAATGGTTCCTCACGAGTTTTTATAACCAGTTCTACTGACGCAATTGCTGGAGAACAATTATCTGAATTCTGGAATCGGGGAGATGATGCTAGTGGATCAGAGGAAGATATATCTGACTCAGAAGATGGTAATGAGGTTGTCAACAACCTAACCAGGTCAAAGCTTCAATCCAGATTGGGAGTAAATGAAAAGCTTGCTATGTTACAACGGGCGGAAGAAAACTACTATCGAAATAATAACACTTCTAAACAGAGCAACAAAGTTGACAAGAATGCTATTTCTGATCCAATGCGAGGAGCAAGTAGGCAAAGGTTACACAATGCTTTAAAACAGGTTCAGCAACGGCTTGACAACTTCAAGATTGAAGTGGATGCGTCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAGTATGGCAAGGCTGGCAAATCATTCTATTATTCGCAAGTGGCAAGTACTGTCAGATGGCTGACAACTGCTGGCTCTATCGAATTGACGAACCGACTTGGTGCAATTAATGCTTCTGCCTCAATGGCTGTCGTATCCGAAGCAGAACAGTCCCTAACACCAGCTGAACAGTCCTTCAAATCGCCACCTGCTTTAGATCCTTGTGCAGAAGATACCAGCAATGAATGCTCTGGCAATGCTAGATCAGAAACTTCTACATGTATTGTGCCAATGGAAAGCTGTTCGTTTAACAGTGCCAAGTTGCCACAAATACCATCCTTCTCTGAATTCGTAAATAGTAGGAAAACAAAAGGGGACCAGTTAAATGACATAAAGAAGCATTCAAGAGTCGAAAAGAAGATGAGGATGCTGTAA 2199 0.4161 MQKKSILPLSDANANRKGKDLRSKEALVKLLRWHFGYPDFRGMQLDAIQSVLSGNDCFCLMPTGGGKSMCYQIPALAKTGIVLVICPLIALMENQVMALKEKGIAADFLSSTKTADAKVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSRLPDVPILALTATAAPKVQKDVVESLQMQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSLGDVCAIVYCLERSMCDDLSTNLSQSGISCAAYHAGLNNKMRSSVLDDWISSKIKVVVATVAFGSGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGVDDRKRMEFILSKSGSKKSQSSSSLEESSKISLNAFNQMVKYCEGSGCRRKKILESFGEQVTASLCGKTCDACRHANIVARCLEDLKTVCALRQKNGSSRVFITSSTDAIAGEQLSEFWNRGDDASGSEEDISDSEDGNEVVNNLTRSKLQSRLGVNEKLAMLQRAEENYYRNNNTSKQSNKVDKNAISDPMRGASRQRLHNALKQVQQRLDNFKIEVDASASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTAGSIELTNRLGAINASASMAVVSEAEQSLTPAEQSFKSPPALDPCAEDTSNECSGNARSETSTCIVPMESCSFNSAKLPQIPSFSEFVNSRKTKGDQLNDIKKHSRVEKKMRML* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00379 732 CDD DEXHc_RecQ 29 229 - -
Lapu9g00379 732 MobiDBLite consensus disorder prediction 533 550 - -
Lapu9g00379 732 NCBIfam RecQ family ATP-dependent DNA helicase 30 444 IPR004589 GO:0004386|GO:0006310
Lapu9g00379 732 Gene3D - 230 456 IPR027417 -
Lapu9g00379 732 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Lapu9g00379 732 MobiDBLite consensus disorder prediction 533 553 - -
Lapu9g00379 732 Coils Coil 561 581 - -
Lapu9g00379 732 SMART ultradead3 36 238 IPR014001 -
Lapu9g00379 732 Gene3D - 3 229 IPR027417 -
Lapu9g00379 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Lapu9g00379 732 MobiDBLite consensus disorder prediction 484 504 - -
Lapu9g00379 732 FunFam ATP-dependent DNA helicase 21 229 - -
Lapu9g00379 732 CDD SF2_C_RecQ 230 363 - -
Lapu9g00379 732 SMART helicmild6 273 354 IPR001650 -
Lapu9g00379 732 Pfam RecQ zinc-binding 367 438 IPR032284 -
Lapu9g00379 732 PANTHER DNA HELICASE RECQ FAMILY MEMBER 18 583 - -
Lapu9g00379 732 FunFam RecQ family DNA helicase 230 455 - -
Lapu9g00379 732 Pfam Helicase conserved C-terminal domain 254 352 IPR001650 -
Lapu9g00379 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 393 IPR001650 -
Lapu9g00379 732 MobiDBLite consensus disorder prediction 648 676 - -
Lapu9g00379 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 374 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00379 Lapu-Chr9 4015333 4024045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00379 20 352 Eukaryotic Initiation Factors Gene Family AT3G19760 21.910 6.56e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00379 K10901 - gmx:100819601 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00379 9 4015333 4024045 Lapu9g00379 9 4015333 4024045 ECH