Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00370 ATGTCCAGCTCGTCGGAGTACTCTGAATTTTCCGGCCACAAACCGGCCAAGTCGCCGGAGAAGTCGAGCTTCTCTCAAACTTGCAGTCTGTTGAGTCAATACATCAAGGAGAAGGGTAGCTTTGGAGATCTCACCCTTGGTATGACATGCAACACCGAACCATGTGGGTCACCTGAGACATCTTGTCAATCTGCTACAACTATGAACTTGTTTCCTACCAAGGAAAACAACGTGACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCACAAGCTTCCTATCGTCCTTCAGAGGAGATTCCAACCTTGGTTAATTCCAGTGCAATTAACTCTGTGAGTAAGGTTGCTAAAACTGCACAGATGACAATATTTTATGGTGGACAAGTTGTCGTGTTTGATGATTTTCCTGCTGACAAAGCAAAGGAGATCATGTCCTATGCTAGAGGGAAACCACAAAGCCAGAACAATTCTGTTTTCACTTACACACAGAGCCAGCCTTCATTTCCTCCTAATTTGGCCAGAACTTCTGCTGATTCAAGTGCTCCAATTATTCCCACGGTGAATATTACCAACTCCATCCATGAACACTCTCAAGCATCATCCAGACCTGTTGTTTGTGATCTGCCAATTGCTAGAAAAGCTTCACTCCACCGGTTTCTGGTGAAGAGAAAGGATAGAATTGCTTCCAAAGCTCCATATCAAGTAACAAATGGGCCTTCATCTGAGTCCATGCCATGGCTTGGGTTGAGTGCTACTTCACCTCAAATCTGA 774 0.4483 MSSSSEYSEFSGHKPAKSPEKSSFSQTCSLLSQYIKEKGSFGDLTLGMTCNTEPCGSPETSCQSATTMNLFPTKENNVTPKNLTAMDLLSPQASYRPSEEIPTLVNSSAINSVSKVAKTAQMTIFYGGQVVVFDDFPADKAKEIMSYARGKPQSQNNSVFTYTQSQPSFPPNLARTSADSSAPIIPTVNITNSIHEHSQASSRPVVCDLPIARKASLHRFLVKRKDRIASKAPYQVTNGPSSESMPWLGLSATSPQI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00370 257 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Lapu9g00370 257 SMART tify_2 115 150 IPR010399 -
Lapu9g00370 257 Pfam tify domain 118 148 IPR010399 -
Lapu9g00370 257 Pfam Jas motif 210 235 IPR018467 -
Lapu9g00370 257 MobiDBLite consensus disorder prediction 234 257 - -
Lapu9g00370 257 MobiDBLite consensus disorder prediction 1 23 - -
Lapu9g00370 257 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 241 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00370 Lapu-Chr9 3914457 3917173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00370 1 252 Tify Gene Family AT1G19180 41.948 5.96e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lapu9g00370 tify 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00370 K13464 - gmx:100801449 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00370 9 3914457 3917173 Lapu9g00370 9 3914457 3917173 ECH
Lapu3g00466 3 4793717 4795562 Lapu9g00370 9 3914457 3917173 PCT