Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00367 ATGGTGAAGCCTAGTAGCGTGGAAAAACCTTCGGAGGAGCGAAGCAATACATCGTACAGAGGAGTACGGAAGAGGAAGTGGGGAAAATACGTATCGGAAATCAGGCTTCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGCGCGTTCGACGCAGCCATGTTCTGCTTACGTGGCAGCGGCGCTAAATTTAACTTCCCGAGTGACCCGCCCAACATCGCCGGCGGGAGGACCATGACTCGCTCTCAGATTCAGATCGCCGCCGCCCGTTTCGCCAATTCGGAGCCCCAGAAAGAGTGTTCTTCGGGTCAGCAACACGCGGATTGTTTAGCTTCGGACGAGGAAACGGCGTCGCTGCCGTTGGAGTCGTCGTCTCCTCCTCTCTCCGACTTGTCGATCCAGAACGACGCAATATCTCTAAAAGGGTCATTTCCCGATCCGTTTTTGGAGCTCGGGTCGGGCAATTTCGTCCCCGAGTTCTCCGATTTTCCGAGTTTCGACGATTTCAGCCGCGATTTCTTCCTACCGGGGCTTCCAAGTTTCGATGAAGGAGCAGAGAACTCGGATGGGATGATAATTCAAGACTCGTTCTTGTGGAATTTCTAA 630 0.5429 MVKPSSVEKPSEERSNTSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPSDPPNIAGGRTMTRSQIQIAAARFANSEPQKECSSGQQHADCLASDEETASLPLESSSPPLSDLSIQNDAISLKGSFPDPFLELGSGNFVPEFSDFPSFDDFSRDFFLPGLPSFDEGAENSDGMIIQDSFLWNF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00367 209 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Lapu9g00367 209 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Lapu9g00367 209 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lapu9g00367 209 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Lapu9g00367 209 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Lapu9g00367 209 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Lapu9g00367 209 CDD AP2 19 75 IPR001471 GO:0003700|GO:0006355
Lapu9g00367 209 MobiDBLite consensus disorder prediction 103 137 - -
Lapu9g00367 209 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Lapu9g00367 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 123 - -
Lapu9g00367 209 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Lapu9g00367 209 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00367 Lapu-Chr9 3879729 3880786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00367 17 209 AP2-EREBP Transcription Factor Family AT1G19210 49.505 1.51e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g00367 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00367 - - gmx:100802508 288.115