Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00365 ATGAAGGCTCCTCCAAATGGCTACTTGCCTAATTCCGGCGAAGGGGAAAGAAAGAGCATCAATTCAGAGTTATGGCATGCATGTGCTGGACCATTGGTTTCTTTACCCCCTGTTGGAAGCCTCGTGGTTTACTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCGTTCCCAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCACGCTGATCCTGAAACTGATGAGGTCTATGCGCAGATGACTCTTCAACCTGTTAATAAATATGACAAGGAAGCAATATTGGCATCTGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCGCTTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAGTACATGGACATTTAGACATATTTATCGTGGACAACCAAAGAGGCATCTATTGACGACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCAGTTCTTTTTATCAGGGATGAAAAACAACAACTTCTTTTAGGCATAAAGAGAGCTAACAGACAGCAGCCAGCTCTATCCTCATCAGTAATATCCAGTGACAGCATGCATATTGGTATTCTTGCCGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTCTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCCCTCTTCAATCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGAGTCAGGGGTACGCAGACATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAGAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCACTTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCGCCTCCATTTTTTAGGCCAAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGATTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGAATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCCGCTGCCCAATCTGGATTTATGCCCCCATCCATGCTTTCATCCAATACACTGCATGGTAACCTTCCCACTGATGATCCATCCAAATTATTGAACTTCCAAGCTCCCGTCCTCTCTGCACCAAATGTACAATTTAACAAACCTAACTTACCAAACCAAGTCAACCAATTGCAACAATCCCCAACATCATGGCCTCCGCAGCAGCAACAACAGCAGAAGCTGCAGTCATTGATGCCAACACCCTTAAACCCACTCCAACAGCAGCAACAGAGGCAACAACAACTGCCTGTACTGCAAAACCTCTCTCAACCACAGCAACAACAACCCCAAATGCCTCAACAGAGAGCACAACAGCCACAACAACAGCAACAGCAGTCATGTCAACAGACCATCATGAATAATGGGGCGGTTTCTTCTAACCAGATTCCAAATCAGTGTGTGCAGCAACCAGTGTCATACTCCCAGCTTCAGCAACAGCAATTACTCTCAGGAAGTATCCCACCCCAACAAAGTTTTCAATCGCCCAATAAGAATACTTTGCTGATGACATCCTTACCGCAAGACTCTCAGTTTCAACAGCAAATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAGACACAGTTGCAATCGTCTCCATTGCAGCTATTGCAACAAAGCCTGTCACAGAGGGCACCACAGCAACCACAAATGACACAAATGTCACAGCAAAACAGCTCAGAGCAGCAACCACAGTTGCAGTTGCTACAGAAATTGCAGCAACAACAGCAACAGCAGCAACAACAACAACAACTCCTTTCCACTTCTAGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACAAAATACTCATCAACAGAACCAGCAATTACCGCAGCTGCCTCTATCACAGTGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTTTCAATGGCAACAGCTACTCTTCTTCTGCTCTGATGCAAACACAGCAGCTTCCAGTGAGCCAATCCCATAATACACAGAAATCATTAACTAATACAAGAGCTCCTTCAACTCTTACAGACGGAGATGCCCCATCATGCTCAACTTCACCATCTACCAATAACTGCCAGATATCTCCTTCAAATCTGATTAAAAGAAATCAACAGGTGCCAACCACATTAGGAGGACCTTTGGTAGTTGAACCTACCAATCATTTGATACAGGAGCTTCATAGAAAATCTGAGATGCAGATCAAACACGAATTACCCAGTGTAAGAGGACCTGACCAACTGAAGTGCAAAGGGACAATTGCTGATCAGATGGAAGCTTCTTCTGGAACATCTTACTCTATTGATCCTAATAATATCCACCAGAACTTCCCGCTTCCCAGTTTCTGCATGGACGGGGATGTCCAATCACACCCAAGAAATAATCTTCCATTTGTCTCTAATCTTGATGGATTAACACCTGATACATTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGCTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCACAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGATGCTCCAGTGATATTGCCATCAATGATCCTGGGGTTTTGAATAACGGCTTGTGGGCTAATCAGACTCAAAGAATGAGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACACGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACAGAGTGGAAACTAGTCTACGTAGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATCTTGTCATCTGCTGAGGTACAGCAAATGAGCTTGGATGGAGATTTAGGTCATGTTCCAGTTCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCGTTTAATCGATAA 3357 0.4438 MKAPPNGYLPNSGEGERKSINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPLLDFSMQPPAQEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALFNQVSLGMRFRMMFETEESGVRRHMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSLWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDDSDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFMPPSMLSSNTLHGNLPTDDPSKLLNFQAPVLSAPNVQFNKPNLPNQVNQLQQSPTSWPPQQQQQQKLQSLMPTPLNPLQQQQQRQQQLPVLQNLSQPQQQQPQMPQQRAQQPQQQQQQSCQQTIMNNGAVSSNQIPNQCVQQPVSYSQLQQQQLLSGSIPPQQSFQSPNKNTLLMTSLPQDSQFQQQIDQQASLLQRQQQQTQLQSSPLQLLQQSLSQRAPQQPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPLSQCHQPQQLGNNAFSMEKLFNGNSYSSSALMQTQQLPVSQSHNTQKSLTNTRAPSTLTDGDAPSCSTSPSTNNCQISPSNLIKRNQQVPTTLGGPLVVEPTNHLIQELHRKSEMQIKHELPSVRGPDQLKCKGTIADQMEASSGTSYSIDPNNIHQNFPLPSFCMDGDVQSHPRNNLPFVSNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDPGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGQYDDNSAASFNR* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00365 1118 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lapu9g00365 1118 ProSiteProfiles PB1 domain profile. 991 1084 IPR000270 GO:0005515
Lapu9g00365 1118 MobiDBLite consensus disorder prediction 1096 1118 - -
Lapu9g00365 1118 MobiDBLite consensus disorder prediction 470 502 - -
Lapu9g00365 1118 Gene3D - 123 227 IPR015300 -
Lapu9g00365 1118 FunFam Auxin response factor 124 228 - -
Lapu9g00365 1118 FunFam Auxin response factor 986 1080 - -
Lapu9g00365 1118 MobiDBLite consensus disorder prediction 587 608 - -
Lapu9g00365 1118 MobiDBLite consensus disorder prediction 650 678 - -
Lapu9g00365 1118 Pfam AUX/IAA family 988 1077 IPR033389 -
Lapu9g00365 1118 Gene3D - 986 1080 - -
Lapu9g00365 1118 Gene3D - 289 360 - -
Lapu9g00365 1118 CDD B3_DNA 125 217 IPR003340 GO:0003677
Lapu9g00365 1118 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1080 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu9g00365 1118 SUPERFAMILY CAD & PB1 domains 1005 1069 - -
Lapu9g00365 1118 SMART B3_2 126 228 IPR003340 GO:0003677
Lapu9g00365 1118 MobiDBLite consensus disorder prediction 758 805 - -
Lapu9g00365 1118 MobiDBLite consensus disorder prediction 528 556 - -
Lapu9g00365 1118 Coils Coil 679 699 - -
Lapu9g00365 1118 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu9g00365 1118 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lapu9g00365 1118 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Lapu9g00365 1118 FunFam Auxin response factor 289 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00365 Lapu-Chr9 3847949 3856550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00365 1 488 B3 DNA Binding Superfamily AT1G19220 82.582 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu9g00365 AUX_IAA 2.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00365 K14486 - gmx:100804628 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00365 9 3847949 3856550 Lapu9g00365 9 3847949 3856550 ECH
Lapu3g00461 3 4744757 4752813 Lapu9g00365 9 3847949 3856550 PCT