Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00364 ATGGGGGTGAAGAAGCTTAGCCAGGGAGTGAAAAATGAGGGTAACGGCAGCAACGATAACGTGTTTGCTTCATGCTCCTTCTCCAGCCTTGGCCTTGATTCCAATTTGTGTGAACAACTTCATGAGAGGTTGGGGTTCGAAGTTCCGACGCTGGTTCAAGCTCAAGCGATTCCTGTTATTCTCTCTGGGCGTCATGCATTGGTAAATGCTGCAACGGGCACGGGGAAGACTGCTGCATATCTCGCTCCGATTGTTCATCACTTGCAGGCTTATGAAAATAGGATACAGCGCTCTGATGGGACATTTGCGTTGGTTCTTGTACCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGATTTCATTGGATTGTTCCAGGATACATTATGGGTGGAGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGACGTCTCTTAGATCACTTGAAGAACACAACATCATTCTTCTACTCAAATCTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTAGAATTAGGATTTGGAAAAGATATAGAGGAAATCATAGATCTTTTAGGTTCGAGAAAAGCAGGGCATGGTGACCAAGAGAATACAGTCCCAAGAAACTCTAAAATTCGAAGACAGAATTTGCTTTTGTCTGCCACCTTAAATGAGAAAGTGAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGATGGTTGGTCTTGATGGTAAGAAAATAGAAAAAAGTTCAACAGTTGTAAGCAATGATCATTCAGAATCTGATGAAGATAATGAAGACAAGTATTCCAGTAAAATGCCAAATGTTGGAGATTACAAAGTCCCTATACAGTTGATTCAGAGATACATGAAAGTGCCTTGCGGTTCACGGCTACCTGTACTTCTTTCAATTATAAAGCATCTCTTTGAAAGGGAACCGTCACAAAAGGTTGTTGTATTCTTTTCAACATGCGATGCAGTAGATTTTCACTATTCACTGTTAAGTGAATTTCAATTTTCATCCTATCCACAAACAGAAGGGATCCGACAGAAGTTTCTTGGATTCAAAACTTTTCGGTTACATGGTAATATGATACAGGAGGACCGGAGAACCAGCTTTCAGACCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCTAGTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCTGGGGAAGCTACGGAATATGTTCATAGAGTTGGTAGAACCGCTCGACTGGGTGAAAAAGGAGAGTCTTTGTTATTTCTGCAACCCGTTGAGATAGACTATTTACAGGACTTGGAAAAACATGGTGTTTCGCTCACGGAGTATCCTGTCCTCAAAGTGTTGGATAGTTTTCCACTATATGGACAAAAGAACTACACGAAGAAGTCAGTGTTCTTAGAGTCACATCCCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCAAAGCCCGAGATGGATGAACTTGCCAGGAAGGCATTTTGCTCTTGGGTTCGCGCATACACAGCCCATCGTGGTGAGTTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCTAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAGCTAAGAAAAGAAAGAGATTTGATAGGAAAACTGGGTTGTCAAAAAGGAGAAAAGTTGCTGGTGTGACAGAACGCAGACCATGA 1797 0.4157 MGVKKLSQGVKNEGNGSNDNVFASCSFSSLGLDSNLCEQLHERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTAAYLAPIVHHLQAYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTTSFFYSNLRWIIFDEADRILELGFGKDIEEIIDLLGSRKAGHGDQENTVPRNSKIRRQNLLLSATLNEKVNHLAKISLDNPVMVGLDGKKIEKSSTVVSNDHSESDEDNEDKYSSKMPNVGDYKVPIQLIQRYMKVPCGSRLPVLLSIIKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSYPQTEGIRQKFLGFKTFRLHGNMIQEDRRTSFQTFKTEKSALLLSSDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPVLKVLDSFPLYGQKNYTKKSVFLESHPWVLCLQKALEAFIMSKPEMDELARKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQAKKRKRFDRKTGLSKRRKVAGVTERRP* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00364 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Lapu9g00364 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Lapu9g00364 598 Pfam Domain of unknown function (DUF4217) 502 562 IPR025313 -
Lapu9g00364 598 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Lapu9g00364 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 253 IPR027417 -
Lapu9g00364 598 MobiDBLite consensus disorder prediction 566 598 - -
Lapu9g00364 598 Pfam DEAD/DEAH box helicase 51 241 IPR011545 GO:0003676|GO:0005524
Lapu9g00364 598 CDD SF2_C_DEAD 298 447 - -
Lapu9g00364 598 Gene3D - 3 256 IPR027417 -
Lapu9g00364 598 CDD DEADc_DDX31 36 254 - -
Lapu9g00364 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 485 IPR001650 -
Lapu9g00364 598 Gene3D - 308 588 IPR027417 -
Lapu9g00364 598 MobiDBLite consensus disorder prediction 570 584 - -
Lapu9g00364 598 SMART helicmild6 356 438 IPR001650 -
Lapu9g00364 598 SMART ultradead3 45 267 IPR014001 -
Lapu9g00364 598 PANTHER RNA HELICASE 24 521 - -
Lapu9g00364 598 FunFam RNA helicase 2 255 - -
Lapu9g00364 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 487 IPR027417 -
Lapu9g00364 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Lapu9g00364 598 SMART DUF4217_3 500 565 IPR025313 -
Lapu9g00364 598 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00364 Lapu-Chr9 3802730 3809709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00364 17 470 Eukaryotic Initiation Factors Gene Family AT3G19760 24.561 1.41e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00364 K14806 - gmx:100805157 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00364 9 3802730 3809709 Lapu9g00364 9 3802730 3809709 ECH