Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00350 ATGTTCAATCCGCACACCTCGCCACCGCTGCCACCGCCGGCGATCACTCCGCCGGCAACCCCTCTCAACCGGGAAAAGCTGTCGCACAAGAAAATTTGCAGAACCAGTGGAGTTACCTTTCCCGTTCCTCAGTCAGTGGAAGTGGTTGACGTTGATGATTTCACTTCTTCCTCCTTTTTCACACCCATCTCCTTCCGAGGCACCACCAAGTCAAACGCGGTCAACGTGGAGCAACACGACAGTGTTTCCAGTCCTGTTTATGTCATTGATCTCTCTGACACAGAGGACGACGATGATGTTCGTATCCTCAATTTCATTCCCCAAAACACCTCTTTCGGCAAACGAAAAAAGCTCAGAGGAGAATCCTCCAAAGCAATTCCCTTTCTCTGTGAAATCTGCACTGAAACCAAAACTTCCCTGGAAGCTTTCTCCATCAACGGCTGCTGTCATGTGTACTGCAATCATTGCATCGTGCTCTACATCCAGTCAAAGCTCCAGGATAACGTGGTCAACATCGGCTGTCCTGTACCTCGATGCAGGGGATTATTGGAAGCTGAAGATTGTCGCTTGATTCTCCCTTCTGAGGTTTTAGATCGGTGGGGTAAAGCCCTGTGCGAGGCGGTGATTTCTGCTGAGGAGAAGTTCTATTGTCCTTTTCCGGACTGCTCTGTGCTGTTGATTCGTGACGGGGAAGATGAGAAGATCAGAGATTCGAATTGTCCAAACTGTAGGAGGCTGTTCTGTGCGCTGTGTAGGGTACCCTGGCATGAGGACATGTCCTGCGAGGAGTTTCAGAAACTGAACGCCGATGAGAGGGGAAGAGAAGATGTGATGTTGAGGAACCTTGCTAAGCAAATGATGTGGAAGAGGTGCCCCAGCTGTAGGTTTTACGTCGCCAAAACTTCTGGCTGCATGTACATGAAATGCAGGTGTGGGAGTGCCTTCTGTTACAACTGTGGGGTTCTTAACTTAACTTCCTCCCATCATTGCATCTCCTGTACACGCTAA 1008 0.496 MFNPHTSPPLPPPAITPPATPLNREKLSHKKICRTSGVTFPVPQSVEVVDVDDFTSSSFFTPISFRGTTKSNAVNVEQHDSVSSPVYVIDLSDTEDDDDVRILNFIPQNTSFGKRKKLRGESSKAIPFLCEICTETKTSLEAFSINGCCHVYCNHCIVLYIQSKLQDNVVNIGCPVPRCRGLLEAEDCRLILPSEVLDRWGKALCEAVISAEEKFYCPFPDCSVLLIRDGEDEKIRDSNCPNCRRLFCALCRVPWHEDMSCEEFQKLNADERGREDVMLRNLAKQMMWKRCPSCRFYVAKTSGCMYMKCRCGSAFCYNCGVLNLTSSHHCISCTR* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00350 335 CDD BRcat_RBR_unk 213 264 - -
Lapu9g00350 335 SMART ibrneu5 271 333 IPR002867 GO:0008270
Lapu9g00350 335 SMART ibrneu5 198 261 IPR002867 GO:0008270
Lapu9g00350 335 FunFam RBR-type E3 ubiquitin transferase 263 335 - -
Lapu9g00350 335 SUPERFAMILY RING/U-box 272 334 - -
Lapu9g00350 335 ProSitePatterns Zinc finger RING-type signature. 148 157 IPR017907 -
Lapu9g00350 335 Gene3D - 215 262 - -
Lapu9g00350 335 MobiDBLite consensus disorder prediction 1 22 - -
Lapu9g00350 335 MobiDBLite consensus disorder prediction 1 19 - -
Lapu9g00350 335 FunFam RBR-type E3 ubiquitin transferase 126 211 - -
Lapu9g00350 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 211 IPR013083 -
Lapu9g00350 335 SUPERFAMILY RING/U-box 204 266 - -
Lapu9g00350 335 SUPERFAMILY RING/U-box 128 207 - -
Lapu9g00350 335 Pfam IBR domain, a half RING-finger domain 279 333 IPR002867 GO:0008270
Lapu9g00350 335 Pfam IBR domain, a half RING-finger domain 204 261 IPR002867 GO:0008270
Lapu9g00350 335 CDD Rcat_RBR_unk 287 320 - -
Lapu9g00350 335 Gene3D - 263 335 - -
Lapu9g00350 335 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 73 326 IPR031127 GO:0004842|GO:0016567
Lapu9g00350 335 ProSiteProfiles Zinc finger RING-type profile. 130 178 IPR001841 -
Lapu9g00350 335 ProSiteProfiles TRIAD supradomain profile. 126 335 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00350 Lapu-Chr9 3642105 3644250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00350 130 321 C3H Transcription Factor Family AT2G19610 31.034 2.76e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00350 K11975 - gmx:100803898 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00350 9 3642105 3644250 Lapu9g00350 9 3642105 3644250 ECH