Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00349 ATGATGTTCCATTCCCAGGGTGTGTCAAGACATTGTAGTCTCCTTGCTGTCCAGAGTGGTAAATCACGTGACACTAAACAAAAGCAGAAGCAGAGTTCTGCTTCTGAGGATCAACCTCCTTACCCCTTTCCAGAGCTTTCTTCCTCTGGCAGTCTTGAGGTCAAGTTATTGATCAGACCTACAACCGATGAACTCGGTCGAGCTCTTGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCTGCGGCTAGAAGATAGGGGAGAAATTGGGGCCCTTGTATGGGAGGATTTTGACCTGTCTGCCCCTGAAGCATTGTGTGGATTATTTGGTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAGGGAGAAAAATTGGCGGAGGCACTCCGTAATAAGGGAGTTCCATACACTATCTATTGGAAAAATGATTTTTCGAAGTATGCAGCTTCACATTTTCGTCATTCTTTTTTCTCTGTAGCGCAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTGGCATCTTTTAGACTATATTGTATACAAAACAATGTCTTACCTTCTAACAGCCAGAAGGGTGCTGGTAAGCTTGGGCCACAGATTCTCGGGGTTCCTCCCAACATTGATATTAGTCCAAGTGTGGCAGACATGAAGGAAGAGGAAGAGGAAAGTTCACCTGAGTCTATTTCTGCTGTAAAGATATATGATGATGATGTGAACATGAGATTTCTTGTTTGTGGAGTTCCCTGCACTTTGGATGCTTGCTTGTTGGGGTCATTGGAGGATGGACTCAATGCTCTTCTATTTACAGAACATCTTATCCAGTTTATTAATTTCTTTTACTGTTGTATATTTTATAGTGCTCCACCACCACCTCTGCAGGCAGGAACATTCTCACGCGGTGTAGTGACTATGCGTTGTGATATATCCACATGTAGTACTGCTCATATATCACTTTTAGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAGCTAATTGAGAAGAGTCAACTTGTTCAGGCATTTCCTAATCATAAACAAAATAAATCACCTTGCTTGGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTCGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCTTCCAATGTGTCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGCATTCAGGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCTGAACGCCTCCTTTTCTTTTGTACTAGGCAGGAGAAAGAAAAGTGTTCTAAGGAACATGTTTTTTCTGCGATTCCAAGTTGGCTGAAGCCTCCACCGCCCAGTCGAAAAAGATCCGAACCATGCTCTAGTTCAAAGTCTATCAATCCTAGTGGCTGGGGAATTGAAGATGTTGGTAGTCATAGACAGAAATTAAATCTTGCAGCTATGAGGCCAATCCCTCAATCTCATAGACACAAGATTCTCCCCTTTTCTGGATTATCTGTGGGTGCAAGACATGATGGAGACCATGGAAAATCGAATCTGCCGCCTGCTCCTATTAAGCATAATGTTTCAGGCCCTACTTCAGTTACAAATAGGAAATCTGTGTCGAACTCATTCCAAGCTAACCAGATTATTTCTTTGAATCCTCTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAATTTTTGATCCTTCGGGGGCATAATCGTCTAATTCCACCAGGTGGGCTTGCTGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGACCTGTTCAACTTATACAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGTATCAATTGGAAAGGGCAAGTTTTCTCCAAGATGCGGAATCACACTTTAACAAATAGAATGACTGGTGTTGGAAATACTCTCAAAAGACATTACGAAACTTATCTCTTAGAATATGAATTAGCTCACGATGACGTAGATGGAGAGTGCTGCTTGATGTGCAACAGTAGTGCAGCAGGTGACTGGGTGAACTGTGGTGTATGTGGTGAGTGGGCTCATTTTGGCTGTGATCGGCGGCAGGGACTTGGAGCATTTAAGGACTATGCAAAAACCGATGGACTGGAGTACGTTTGTCCTCGCTGCAGCGCGTTAAAATTCAGTAAAAAATCTCAAAAAACTGCTAATGGTTATTAA 2277 0.4304 MMFHSQGVSRHCSLLAVQSGKSRDTKQKQKQSSASEDQPPYPFPELSSSGSLEVKLLIRPTTDELGRALEQLQPDFVYLQGLRLEDRGEIGALVWEDFDLSAPEALCGLFGSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSQKGAGKLGPQILGVPPNIDISPSVADMKEEEEESSPESISAVKIYDDDVNMRFLVCGVPCTLDACLLGSLEDGLNALLFTEHLIQFINFFYCCIFYSAPPPPLQAGTFSRGVVTMRCDISTCSTAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAFPNHKQNKSPCLEPRRSASVACGSSVFEVCMRVPAWASQVLRQLASNVSYRSLVMLGIASIQGLPVASFNKDDAERLLFFCTRQEKEKCSKEHVFSAIPSWLKPPPPSRKRSEPCSSSKSINPSGWGIEDVGSHRQKLNLAAMRPIPQSHRHKILPFSGLSVGARHDGDHGKSNLPPAPIKHNVSGPTSVTNRKSVSNSFQANQIISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLMCNSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00349 758 Pfam ARID/BRIGHT DNA binding domain 584 681 IPR001606 GO:0003677
Lapu9g00349 758 SUPERFAMILY FYVE/PHD zinc finger 684 747 IPR011011 -
Lapu9g00349 758 Gene3D - 582 686 IPR036431 GO:0003677
Lapu9g00349 758 CDD PHD_ARID4_like 691 742 - -
Lapu9g00349 758 CDD ARID 583 681 - -
Lapu9g00349 758 MobiDBLite consensus disorder prediction 458 485 - -
Lapu9g00349 758 SUPERFAMILY ARID-like 582 696 IPR036431 GO:0003677
Lapu9g00349 758 ProSiteProfiles ARID domain profile. 581 685 IPR001606 GO:0003677
Lapu9g00349 758 SMART ARID_2 578 681 - -
Lapu9g00349 758 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 758 IPR042293 -
Lapu9g00349 758 MobiDBLite consensus disorder prediction 18 48 - -
Lapu9g00349 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 744 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00349 Lapu-Chr9 3631261 3639555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00349 2 757 ARID Transcription Factor Family AT3G43240 64.954 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu9g00349 ARID 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00349 - - gmx:100808357 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00349 9 3631261 3639555 Lapu9g00349 9 3631261 3639555 ECH