Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00348 ATGGCTTCTTCCAATTCCGTTTCTTCTCTCAGCGTCGTCGGATACACGCACACTGCTTCTCCACCCAACAACCACCTACCATCGCTATCACACATCACTCTCCTAGCCCTAACGCTCCTCCTCCTCGCCCTTACCCTTTCGCTAGCCGTTTATTTCCTTCTCCGTCACCGTAACCGTTTCCTCCGTCGAATCTCTCCCTCATCCGCTGCATTATTCTCCTCCGGGAATCAGGTATCGTCGGAGACCGCTTCGCCTTCCGTCGTCGACTCTCTCCCGGCGTTCACCTTCTCCTCCGTCACGCGACGCTCCGCCGCCGGAGGCGGCGGAGCGGACTGCGCCGTGTGCTTATCGAAGTTCGAGCAGCACGACCTTCTCCGCTTGCTACCTCTCTGCTGCCACGCGTTCCACGCTGAATGCATTGACACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGATCCACCGTCGGCGCGTCGGAGTCCGACCTCGCGAAGGTCTTTCGCTCGTCGTCCGGTTCCGGCGGCGAGAGCTTCCGTCTTGAGATAGGGAACATCAGCAGCAGCGGCCGCCATTCTCTGCCGAGCTTGGCTGGTGAGGTAGGGCGTGGAGGAAGTAGTGACAGTAGTGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAGTTCTGGAAGGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTCATGGTGGAGATTACGATGCGGAAGCAAACCGTTTCGGGGATGAAATCGGTGAAATGTTTCGATGGCTCTCGGGGGTTTGA 810 0.5765 MASSNSVSSLSVVGYTHTASPPNNHLPSLSHITLLALTLLLLALTLSLAVYFLLRHRNRFLRRISPSSAALFSSGNQVSSETASPSVVDSLPAFTFSSVTRRSAAGGGGADCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSTVGASESDLAKVFRSSSGSGGESFRLEIGNISSSGRHSLPSLAGEVGRGGSSDSSGWLKDYVDRLSNTMSFRSSGRFFTGSSRRSDVVHGGDYDAEANRFGDEIGEMFRWLSGV* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00348 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 159 IPR013083 -
Lapu9g00348 269 SMART ring_2 112 153 IPR001841 -
Lapu9g00348 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 164 - -
Lapu9g00348 269 SUPERFAMILY RING/U-box 94 159 - -
Lapu9g00348 269 CDD RING-H2_EL5-like 111 154 - -
Lapu9g00348 269 Pfam Ring finger domain 111 154 IPR001841 -
Lapu9g00348 269 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Lapu9g00348 269 FunFam E3 ubiquitin-protein ligase ATL6 73 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00348 Lapu-Chr9 3626977 3627957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00348 10 154 C3H Transcription Factor Family AT2G34990 35.099 1.94e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00348 K10663 - gmx:100804962 229.95