Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00344 ATGGATAAAATCAGCCATTGTTGTCTTTTTCTTCATGTGGGACTGAGAACACAACAATTGGTGTTAACCCTTTTAGTATTAGTAAATGCAGCTTCGTGGGTCACCATTTCTGATGCTCACAATGAATGCAGTCTTACTAGATATCCCAATCTATGTGCTCAAACCTTGATGCAATTTGGTTCATCCAATCAACCTGTTGATAACATTCTGGCTCTTGTCAATAAAACCATATCAGAAACCAAATTGCCAAGTTCATATTTTGCTGAATTCAAGACTGATAATGCTCATGTAGCCCATTCTGTTGTTGCAGATTACTGTGAAGAGCTAATGAGCATGTCACTGAAAAGGTTGGACCAATCCCTGAGAGCACTGAAATCCCCTAGAAGAAACAATAATGACATCCAAACATGGCTAAGTGCTTCCCTAACTTTCCAACAATCTTGTAAAGACTATGCACATGCACATGCCACAACACACTCTGCAGATGACCTTATGCAAAGGATGTCCAACAAGATGGGCTATCTTTCTCAACTGGGAAGCAACTCATTAGCTCTTGCTAACCATATGAGCACAAAAGGTAGCCACAAAGTTGGCATTAAGGAAGAGGAACATGAATTTCCTGAGTGGGTATCAGCCAAAGGACGTAAACTGCTTCAAGGAGCCACCATAAAAGCAAATGCCATAGTTGCAAAAGATGGTTCTGGAAACTACAAGACAGTTTCTGAAGCCATTAACGCAGCTTCGGGAAAACGGTTTGTGATTTATGTCAAGGAAGGGGTTTACAAGGAGAAGATTCGCACCAGCAAAGATGGTATCACCTTGATTGGAGATGGAAAATACTCTACTCTTATTGTTGGAGATGACAGTGTTGCCATGGGTGCTACCTTACCTGACTCAGCCACATTTACAATCACTGGCGATGGCTTTGTCGCACGAGACATCGGATTCCAGAACAACGCCGGACCACAAGGCGAACAAGCGGTGGCTCTGAACATTGCCTCCGACCGTTCCGTCCTCTATCGGTGCAGCTTAGCAGGGTACCAGGACACCCTCTACGCCCACGCCCTCCGCCAGTTCTACGCAGAGTGCGACATTATAGGCACCATCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGCGCTGCAACCTCCTCCTCCGCCGCCCCCACGGCTCCAGCTACAACGCCATTCTGGCTAACGGCCGAAACGACCCCGGCCAGAACACGGGCTTCTCCGTTCACAAGTGCAGCATATCACCCACCGCGGACTTTTCCTCTGTGAAGCACTCGTATAGTTCGTTTCTGGGGAGGCCCTGGAAGGAGTATTCGAGATCTGTGGTGATGGAGAGTAGAATCGACGATGCCATTTCAGCGAAGGGGTGGGTGGCGTGGCCTGGGTATGGAAGCTCTGTGTTGAAGAGTTTGTATTTCGCCGAGTATGGTAATGAAGGACCTGGCGCTGGAACTGCAGAGAGGGTACAGTGGCAGGGTTTTCGTGTTCTTCAGGCGCAAGAGGCTGGGAAATTCACTGTTGCTTCTTTCATTGCTGGAAACTCGTGGATTCCTTCCACTGGAGTTACTTTCATTTCAGGGCTCAATTAA 1605 0.4754 MDKISHCCLFLHVGLRTQQLVLTLLVLVNAASWVTISDAHNECSLTRYPNLCAQTLMQFGSSNQPVDNILALVNKTISETKLPSSYFAEFKTDNAHVAHSVVADYCEELMSMSLKRLDQSLRALKSPRRNNNDIQTWLSASLTFQQSCKDYAHAHATTHSADDLMQRMSNKMGYLSQLGSNSLALANHMSTKGSHKVGIKEEEHEFPEWVSAKGRKLLQGATIKANAIVAKDGSGNYKTVSEAINAASGKRFVIYVKEGVYKEKIRTSKDGITLIGDGKYSTLIVGDDSVAMGATLPDSATFTITGDGFVARDIGFQNNAGPQGEQAVALNIASDRSVLYRCSLAGYQDTLYAHALRQFYAECDIIGTIDFIFGNAAAVFQRCNLLLRRPHGSSYNAILANGRNDPGQNTGFSVHKCSISPTADFSSVKHSYSSFLGRPWKEYSRSVVMESRIDDAISAKGWVAWPGYGSSVLKSLYFAEYGNEGPGAGTAERVQWQGFRVLQAQEAGKFTVASFIAGNSWIPSTGVTFISGLN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00344 534 Pfam Plant invertase/pectin methylesterase inhibitor 41 185 IPR006501 GO:0004857
Lapu9g00344 534 SMART PMEI_2 34 185 IPR006501 GO:0004857
Lapu9g00344 534 PANTHER PECTINESTERASE 28 523 - -
Lapu9g00344 534 Gene3D - 220 533 IPR012334 -
Lapu9g00344 534 FunFam Pectinesterase 37 190 - -
Lapu9g00344 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 190 IPR035513 -
Lapu9g00344 534 CDD PMEI-like_3 43 191 - -
Lapu9g00344 534 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Lapu9g00344 534 Pfam Pectinesterase 226 519 IPR000070 GO:0030599|GO:0042545
Lapu9g00344 534 NCBIfam pectinesterase inhibitor domain 21 170 IPR006501 GO:0004857
Lapu9g00344 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 190 IPR035513 -
Lapu9g00344 534 FunFam Pectinesterase 220 533 - -
Lapu9g00344 534 SUPERFAMILY Pectin lyase-like 221 532 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00344 Lapu-Chr9 3585591 3588348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00344 19 533 Carbohydrate Esterase AT2G45220 41.985 4.53e-128 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00344 K01051 - gmx:100795439 845.884