Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00343 ATGGCCTTCCAGGATTTCGAACTCATCACTGAGAGGAGAAGAAACGAGAACAGACTCAAGCTGAGGAAGAAGATCCTCATCAGCGTCGTTTCCGCCGTTCTTCTCGCATGTGTGGTTGGCGCCGCCACATTCGTGGTGGTGCAGAGAACCGGCCCCTCCGCCAAAACCCAAACCCCACTGTCAGAAACCTCCGAGACACCACGCGTGGACCGCAACTCGAGGCTCGTGGAAATGATCTGTAGCTCCGCGGAATACAAGGCCAAATGCCAGAAAACCCTCGGTGACGCTCTGAAGAAGGACCCGAAGCTGTCGCAGCCCAAGGACCTGATCATGGTCTCCATGATCTTGGCCGAGAACGAGGTGAACAAAGCCTTCAACGAAACCGCGAAAATGGACTTCCAGTCCGAAGAGGAGAAAGGCGCGTACAGTGATTGCAAGGGGATGTTCCAAGACGCCCAGGAAGAGCTGGAACGTTCGATCAACGAGGTCGGAGAAAACGATGCCAAAGTACTCTCCACGAAGGCTTCAGAACTCAACAACTGGCTCAGCGCGGTTATGAATTACCAGCAAACCTGCATCGACGGGATTCCCGAAGGAAAGTTGAAGGAGGAGTTCAAGAAGTTGTTCACCGAGTCAAAGGAGCTTGTGAGCAATTCCCTTGCCGTTGTGTCGCAGTTTTCTTCGTTCTTTTCGATCTTCCAAGGAGCTGGGGACATTCACCTTCCATGGCAAACCAACGGTGATGATGCAGCTGGCCCTGCTTCTGGTTCTCCTTCTGATCCTGCTTCTGTTCCTTCTTCCTATGCTCCTGGTGTTGCCCCTGCAGGTTCTGCTCTTGCTCCTGGTTCCGCTCCTCGTGCGGCTCCGGGCCCAACTCCTTCCTTGGATGGCCCACTTCCAACATGGGCTACCCCGGTTCCTGCTTGGGCTGGCCCTTCCGAGTTTAAGGGATCAAATGAGAAACCCACACCCAATGTCACCGTCGCACAAGATGGCAGTGGAGACTTCAAAACTATCTCTGAAGCCTTGGCTGCCATCCAAACACCATACGAGGGAAGGTACGTGGTTTATGTTAAAGCCGGAGTTTACGATGAGACCGTGACAGTGACAAAGAAATTGACAAACCTAACCATGTACGGTGACGGAGGTGACAAAAGTATCATCACTGGCAACAAAAATTACGTTGATGGAGTCAGAACTTTCCAAACTGCATCATTTGTGGTACTTGGAGATGGATTCATTGCCAAAGAAATGCAATTCAGAAACACTGCTGGAGCAGAGAAGCATCAAGCAGTGGCCGCAAGAGTGCAAGCCGATCAAGCATTGTTTTTCAACTGTGTCTTTGACGGTTACCAAGACACTCTCTACGCCCAAACCCACAGACAGTTCTACCGCGACTGCACCATCACCGGCACCATCGACTTCATCTTCGGGGACGCATCAGCTGTGTTCCAAAACTGCACCATGGTGGTGAAAAAGCCCCTGGAAAACCAGCAGAACATTGTCACTGCACAAGGGAGACTCGACAAGCAAGAGGACACTGGCTTCGTTCTGCAGAAGTGTGTGATCAAAGCTGCTGATGACTTGGTGGCAGTGAAGGACAATGTCAGAAACTACCTCGGAAGGCCCTGGAAGGAGTACTCAAGAACCATCATCATGGAGACTCAAATCGATGACTTGATTCACCCCGATGGGTGGCTTCCTTGGGAAGGTGACTTTGCACTCAACACGCTCTACTATGGTGAGTTCAACAACAATGGAGCAGGTGCCAGCACCACTGCTAGGGTCAATTGGCCTAACCGCAAAGTCATTGATAAGGATGAGGCTGCTACCTACACGGTTGAGGCTTTCTTGCAAGGGACATGGATCAATGGCACAGGTGTACCAGCTCAACTCGGCTTGTACAATTGA 1911 0.5154 MAFQDFELITERRRNENRLKLRKKILISVVSAVLLACVVGAATFVVVQRTGPSAKTQTPLSETSETPRVDRNSRLVEMICSSAEYKAKCQKTLGDALKKDPKLSQPKDLIMVSMILAENEVNKAFNETAKMDFQSEEEKGAYSDCKGMFQDAQEELERSINEVGENDAKVLSTKASELNNWLSAVMNYQQTCIDGIPEGKLKEEFKKLFTESKELVSNSLAVVSQFSSFFSIFQGAGDIHLPWQTNGDDAAGPASGSPSDPASVPSSYAPGVAPAGSALAPGSAPRAAPGPTPSLDGPLPTWATPVPAWAGPSEFKGSNEKPTPNVTVAQDGSGDFKTISEALAAIQTPYEGRYVVYVKAGVYDETVTVTKKLTNLTMYGDGGDKSIITGNKNYVDGVRTFQTASFVVLGDGFIAKEMQFRNTAGAEKHQAVAARVQADQALFFNCVFDGYQDTLYAQTHRQFYRDCTITGTIDFIFGDASAVFQNCTMVVKKPLENQQNIVTAQGRLDKQEDTGFVLQKCVIKAADDLVAVKDNVRNYLGRPWKEYSRTIIMETQIDDLIHPDGWLPWEGDFALNTLYYGEFNNNGAGASTTARVNWPNRKVIDKDEAATYTVEAFLQGTWINGTGVPAQLGLYN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00343 636 FunFam Pectinesterase 319 634 - -
Lapu9g00343 636 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 227 IPR035513 -
Lapu9g00343 636 ProSitePatterns Pectinesterase signature 2. 469 478 IPR033131 -
Lapu9g00343 636 MobiDBLite consensus disorder prediction 286 300 - -
Lapu9g00343 636 Gene3D - 319 634 IPR012334 -
Lapu9g00343 636 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 226 IPR035513 -
Lapu9g00343 636 Pfam Plant invertase/pectin methylesterase inhibitor 75 221 IPR006501 GO:0004857
Lapu9g00343 636 MobiDBLite consensus disorder prediction 244 327 - -
Lapu9g00343 636 FunFam Pectinesterase 72 227 - -
Lapu9g00343 636 CDD PMEI-like_3 79 223 - -
Lapu9g00343 636 PANTHER PECTINESTERASE 33 624 - -
Lapu9g00343 636 SMART PMEI_2 71 222 IPR006501 GO:0004857
Lapu9g00343 636 NCBIfam pectinesterase inhibitor domain 65 225 IPR006501 GO:0004857
Lapu9g00343 636 SUPERFAMILY Pectin lyase-like 322 629 IPR011050 -
Lapu9g00343 636 Pfam Pectinesterase 325 620 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00343 Lapu-Chr9 3566188 3568281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00343 16 629 Carbohydrate Esterase AT5G49180 38.907 1.03e-142 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00343 - - gmx:100807628 918.302