Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00342 ATGTTAAATCTCTTCAACAATGTTGGACACTCAAACATCGTAGAGAAGCAAAGAGGAGTAGTTCAAGACTGCCGGGAACTCCACCAATCCTCATTGGCTTCTTTGGAAGGATCCATATCAGGGATCCGTTCCTCCAACATGGACATAATTGATGTAGCAATATACCTCAGCGCAGCCCTCACCAACAAGAACACATGTCTAGAAGGTCTAGATTCTGCTACTGGCACCATGAAACCAGTTCTGGTGAAATCTGTGATCAACACGTACAAGCATGTCAGTAACTCTCTGGCGATTCTCTATAACCCAGAGATGGGGACTCCTGAAAACAACCCTTTGAAGGGTGATCCAAAGCGGCTACCATGGAGTGACCAAAGGTTCTTTCAGGACTCAGATTGGGAAGATTATGACCCATATTGGCTTGTTGTGGCTGCAGATGGAACTGGAACATTTAGCACCATCACTGACGCCATCAACTTTGCTCCAAATAACAGCAAGCATAAGATAGTGATCTATGTCAAAGAAGGGACTTATAATGAAAACGTGGAAATCCCAAGATATAAGACCAACATTGAGATTCGTGGCGATGGAAGGGAAGTCACTGTCGTAACTGGTAACAGAAGCTTTGGTGATCGCTGGAGCACTTTCAGGTCTGCAACACTAGCGGTTTCTGGTGATGGTTTTCTTGCGAGTGATATTGCAATTAAGAACAGTGCAGGGCCAGAGAAGGGCCAAGCAGTGGCCTTGAGGGTAAATGCAGACTTAACTGCTTTTTACAGATGTGCAATTTATGGTTACCAAGACACATTATACGTTCACTCCTTTAGACAATTCTACAGAGAGTGTGACATTTATGGGACCATAGATTTCATATTTGGAAATGCAGCAGTGGTTCTACAAGCATGTAACATTACATCCAGAAAACCATTGCATGGTCAAGCCACTGTTATCACTGCACAGTCCAGAGAAAACCCACAAGAGCCCACTGGCATCGTAATCCAAAACAGTATAATCAACGCAAACTTTGATGACAAGAGTGTTAAGAGCTACCTCGGGAGGCCATGGAAGCCCTTTTCTCGCACCGTTTACCTCGAGTCCTTCATTGATGACTTCATTGACCCAAAGGGTTGGACAGAGTGGACTAATGATAATGAGAAAGGATTGAACACCTTGTATTACGGAGAGTACGAGAATTATGGACCTGGTTCCAACACAGACAATCGTGTAAAATGGTCTGGCTACCATGTAATGGACGATGAAGATGCCTACAATTTCACAGTTACAAAGTTCATCAATCAAGATTCCTGGCTTGACTTTACCTTTATTCCTTTTGAACAACTTTGA 1341 0.4348 MLNLFNNVGHSNIVEKQRGVVQDCRELHQSSLASLEGSISGIRSSNMDIIDVAIYLSAALTNKNTCLEGLDSATGTMKPVLVKSVINTYKHVSNSLAILYNPEMGTPENNPLKGDPKRLPWSDQRFFQDSDWEDYDPYWLVVAADGTGTFSTITDAINFAPNNSKHKIVIYVKEGTYNENVEIPRYKTNIEIRGDGREVTVVTGNRSFGDRWSTFRSATLAVSGDGFLASDIAIKNSAGPEKGQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQACNITSRKPLHGQATVITAQSRENPQEPTGIVIQNSIINANFDDKSVKSYLGRPWKPFSRTVYLESFIDDFIDPKGWTEWTNDNEKGLNTLYYGEYENYGPGSNTDNRVKWSGYHVMDDEDAYNFTVTKFINQDSWLDFTFIPFEQL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00342 446 FunFam Pectinesterase 136 446 - -
Lapu9g00342 446 CDD PMEI-like_3 11 102 - -
Lapu9g00342 446 Pfam Pectinesterase 140 432 IPR000070 GO:0030599|GO:0042545
Lapu9g00342 446 SMART PMEI_2 9 98 IPR006501 GO:0004857
Lapu9g00342 446 ProSitePatterns Pectinesterase signature 1. 164 183 IPR018040 -
Lapu9g00342 446 SUPERFAMILY Pectin lyase-like 138 445 IPR011050 -
Lapu9g00342 446 PANTHER PECTINESTERASE 15 437 - -
Lapu9g00342 446 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 101 IPR035513 -
Lapu9g00342 446 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 99 IPR035513 -
Lapu9g00342 446 Pfam Plant invertase/pectin methylesterase inhibitor 17 98 IPR006501 GO:0004857
Lapu9g00342 446 ProSitePatterns Pectinesterase signature 2. 283 292 IPR033131 -
Lapu9g00342 446 NCBIfam pectinesterase inhibitor domain 11 100 IPR006501 GO:0004857
Lapu9g00342 446 Gene3D - 138 446 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00342 Lapu-Chr9 3561120 3562793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00342 1 444 Carbohydrate Esterase AT2G26440 58.531 7.50e-180 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00342 - - gmx:102665651 665.611