Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00341 ATGGCTTATTCATCTCATAAACTCTTCTTCCTTTTATTTGCAATATTCTTCTCGCACATTTGTGCTGTAAACTCCTCCAATGCTTCCACTATACTTCATTCCAATCTATCTTTTTTAAGATCTTTCTGCACAACCACCCCGTATCCAGAAGTTTGTTTCAATTCATTGAAGCTATCCATCTCAATAAACATAAGTCCAAATATTATCAACTTCCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAACCACAAAGCTCTCCAATATCTTCCACAATGTTGGACACTCAAACATCTTAGAGAAGCAAAGGGGAGCAGTTCAGGACTGCCGGGAACTCCACCAATCCACACTAGCTTCTTTGAAAAGATCACTATCAGGGATCCGTTCCTCTAACTCCATGAACATAGTTGATGCAAGAGCCTACCTCAGTGCAGCCCTCACCAACAAGAACACATGCCTAGAAGGCCTAGATTCTGCTTCTGGCTCCATGAAGCCAGCTCTGGTGAAATCTGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCTGTGCTCCCTAGGCCCGAGACGGGGACTCCCAAAGGCCAGAAGAATAACCAGCCTTTGATGAATGCTCCAAAGTGGTTATCAAGCCGAAAGCAAGGCCTCTTTCAAGACTCAGATAGGGAAGAATATGACCCAGATGAAGTGCTAGTTGTGGCTGCCGATGGAACTGGGAACTTTACCACCATCACTGAAGCCATCAACTTTGCTCCGAATAACAGCATGGATAGGACAGTGATCTATGTCAAAGAAGGGATTTATGAGGAAAATGTAGAAATCCCAAGCTATAAGACCAACATTGTGATGCTTGGCGATGGAAGTGATGTCACTGTCGTAACTGGTAACAGAAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGTGATGGTTTTCTTGCACGTGACATTGCAATTGAGAACAGTGCAGGGCCAGAGAAGCACCAAGCAGTGGCCTTGAGGGTAAATGCAGACTTAACTGCTTTTTACAGATGTGCAATTTATGGTTACCAAGACACTTTATACGTTCACTCCTTTAGACAATTCTACAGAGAGTGTGACATTTATGGGACCATAGATTTCATATTTGGAAATGCAGCAGTGATTCTACAAGATTGTAACATTATATCCAGAAAGCCATTGCCTGGCCAATTCACTGTCATCACTGCACAATCTAGAGATAGCCCAGATGAGGACACTGGCATCTCAATCCAAAACTGCTCAATCATAGCTACCCTTGATCTGTATTCCAACTCTAGTAGTTTCAAGAGCTACCTTGGGAGGCCATGGAGGGAGTATTCTCGCACTGTTTACCTGGAGTCCTACATTGACAACTTCATTGATCCAAGGGGTTGGACAAAGTGGTCTAGTGAACAACCATTGGACACATTGTACTATGGAGAATATGACAACTACGGACCTGGTTCCAGCATAGATAATCGTGTACAGTGGTTTGGCTACCATTTGATGGATTATGGTGATGCATATAATTTCACAGTTTCCCAGTTCATCAATGGAGATGGTTGGCTTGATTCTACTTCCGTACCTTACGATAATGGGATTTGA 1623 0.4331 MAYSSHKLFFLLFAIFFSHICAVNSSNASTILHSNLSFLRSFCTTTPYPEVCFNSLKLSISINISPNIINFLLQSLQVAISETTKLSNIFHNVGHSNILEKQRGAVQDCRELHQSTLASLKRSLSGIRSSNSMNIVDARAYLSAALTNKNTCLEGLDSASGSMKPALVKSVINTYKHVSNSLSVLPRPETGTPKGQKNNQPLMNAPKWLSSRKQGLFQDSDREEYDPDEVLVVAADGTGNFTTITEAINFAPNNSMDRTVIYVKEGIYEENVEIPSYKTNIVMLGDGSDVTVVTGNRSVGDGWTTFRSATLAVSGDGFLARDIAIENSAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVILQDCNIISRKPLPGQFTVITAQSRDSPDEDTGISIQNCSIIATLDLYSNSSSFKSYLGRPWREYSRTVYLESYIDNFIDPRGWTKWSSEQPLDTLYYGEYDNYGPGSSIDNRVQWFGYHLMDYGDAYNFTVSQFINGDGWLDSTSVPYDNGI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00341 540 MobiDBLite consensus disorder prediction 183 205 - -
Lapu9g00341 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 187 IPR035513 -
Lapu9g00341 540 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Lapu9g00341 540 Gene3D - 226 540 IPR012334 -
Lapu9g00341 540 NCBIfam pectinesterase inhibitor domain 12 184 IPR006501 GO:0004857
Lapu9g00341 540 FunFam Pectinesterase 35 187 - -
Lapu9g00341 540 FunFam Pectinesterase 224 540 - -
Lapu9g00341 540 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Lapu9g00341 540 PANTHER PECTINESTERASE 20 530 - -
Lapu9g00341 540 SUPERFAMILY Pectin lyase-like 228 538 IPR011050 -
Lapu9g00341 540 Pfam Pectinesterase 231 526 IPR000070 GO:0030599|GO:0042545
Lapu9g00341 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 184 IPR035513 -
Lapu9g00341 540 CDD PMEI-like_3 41 184 - -
Lapu9g00341 540 SMART PMEI_2 34 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00341 Lapu-Chr9 3556848 3559227 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00341 41 540 Carbohydrate Esterase AT2G26440 66.994 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00341 - - gmx:100776969 977.237