Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00339 ATGGCGCTTTCTTCAACCAAAGAGTTATCTCGAAAAGTGGTCACGCAAACACTCATCTTCTTCCTTTTGTTTTTTCCGAGTGTCTTTGGTGCTTCACATGGCAGCAGCATCAACTCCCTGGGATCCGAGTTTCTGAAGGTTTCGCCTTCTGAATTCGCGGGGACAGTGAAAAGTGTGGTTGATGTGTTGCAAGATGTGACCTCTATCCTCTCTGAGTTCGGTTCTGGCTTCGGAGACTCGCTTCTTTCTAATGCCGTCTCTGATTGTCTAGATTTGCTTGACCTCTCCTCTGATGAACTTGATTGGTCTGTCTCTGCTACCCAGACTCCCCAAGGGAAGCATAACAGTACAGGAAATCTAAGTTCAGATTTGAGGACATGGCTAAGTGCTGCACTTGCAAACCAAGACACATGCATGGACGGATTCGATGGCACCAACGGCATTGTGAAGGGTTTAGTGTCCTCGGGGTTAGGTCAAGTGATGACATTGCTGCAACAACTTCTTACACAGGTCAACCCCATTTCGAACCACTTTCCTTTCTCTTCCACGCAGGGGCAGTTTCCGTCGTGGGTTAAACCAGGGGACAGGAAGCTGCTGCAGGGAAATGGGGTGGTCGCGGATGCGGTGGTTTCCACCGATGGCACCGGGAACTTCACCAAGCTCATGGATGCAGTCTTGGCTGCGCCTAATTACAGCATGAAACGCTACGTGATATACGTGAAGAGAGGGATTTACCATGAGAATGTTGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATCGGAGACGGCATGAATGCTACTGTTATCTCCGGTAACAGGAGCTTCGTCGACGGTTGGACCACCTTCCGGTCAGCAACTTTTGCTGTTAGTGGCAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACAGCAGGACCAGAAAAGCACCAAGCTGTGGCACTGAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTTTGGTTACCAAGATAGTCTCTATACTCACACCATGCGTCAATTCTACAGAGAATGCAGAATCAGTGGCACTGTGGATTTCATATTTGGTGATGCCACTGCCATTTTCCAAAACTGCCTCATAGAGGCCAAAAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCATGGCAGGAAAACCCCTGATGAACCAACTGGTTTCTCCATCCAATTTTGCAACATCTCTGCTGATTCTGACCTTGTGAACTCGGTTAACTCCACCCACACATACCTTGGCAGACCCTGGAAACCATATTCTAGAACAGTTTTCATGCAGTCTTACATCAGTGATATGTTGAGGCCAGAAGGGTGGTTGGAGTGGAATGGGGACTTTGCCTTAGACACATTGTACTATGCAGAGTACTCGAACTATGGGCCAGGTGCTGGACTTGCTAACCGAGTGAAATGGCCAGGGTACCATGTGATGAATGATTCCAGCCAGGCTAGTAATTTCACAGTATCACAATTTATTGAGGGGAATCTTTGTTTTCTCACTCATCTTGTGCAATTCATTTCAATGTCTGTTTTCTGGACAAAACAACTGGCTCCAATTCCATATGCCACATTCATCTTCATCTTCTTCTTCTTTGCTCCCTGTGAATTCACGATACTCCGTGCCCTCGAAGTTTCTCCTTCCGAATTCATAGGCTCCGTGAGAACAGTAGGTGATGTTTTGCAAAACGTTACATCCACTCTCAAATCTGAGTTCATCAATGTCAAAAGTGAGTTTCCTCTTTCTGATGCCATTTTTGCATGTCTCGAGTTGTTGGACTTGTCAGCTGATGAACTCAGCTGGTCCATTTCGGCTGTTCAAACTCCCCAAGGGAAGGATAACAGTACTGGGAATATGAGCTCTGATTTGAGGACATGGCTAAGTGCTGTACTTGCGAACACAGACACCTGCATGGATGGTTTTGAAGGTACAAGTGGGAATGTGAAGGATTTGATATCCAATGAAATTAAGGAAGCTACGTGGTTGCTCCAAAAGCTGGTGGACCAGGTGAAGCTTGTTTCGGGTGATTTCAGCAGGGACAAATTTCCTTCATGGGTTGAACCACTGTTGCAGAAAAAAATGATGCCTGCAGATGCTGTAGTTGCTGCTGATGGGAGTGGTAATTTTACTACGGTGATGGATGCTGTGAATGCAGCTCCCGAGTATCGCATGAGACGCTTTGTGATACACATAAAGAAGGGCTTGTACACTGAGAAAGTTGAGATTAAGAAGAAGAAGTGGAACCTTGTGATGATTGGAGAGGGTATGGATGCCACTGTTATCTCCTATAACCTCAGCCGTACTCAAAATTTAACCACATTCGGAACAGCTACCTTTGGTGTGAGTGGAAGAGGATTCATAGCAATAGACATTTCCTTCAGAAACAGTGCAGGACCCGAAAGAAACCAAGCTGTTGCACTGAGATCAGACTCTGACCTCTCAGTGTTCCACCGATGTGGGATTTATGGCTACCAAGACAGCCTCTATGCACACTCCTTGCGCCAATTTTACAGAGAATGCAAAATCAGTGGCACAGTGGATTTCATATTTGGACGTGCCAGTGCAGTATTCCAGAACTGCACAATATTGGTAAAAAAAGGCTTACAAGGACAGAAGAACACAATCACAGCTCATGGAGAAACGATCCCTTCTCGATCATCTGGCTTCTCCATCCAATTCTCCAACATTTCAGCAGATTATGACCTTCTGGCCTCAGTTAACACCACCTCAACGTACCTTGGGAGACCGTGGAAGGCATATTCTAGGGCAGTTTTCATGCAGTGTTACATGAGTGAGGTGTTAAGGCCAGAAGGGTGGCTAGAGTGGAATGGATCATTGTATTTGGACACTTTGTACTTTGGAGAGTACAAGAATTATGGAGCAGGAGCTAGGGTAGATAGCAGAGTGAAATGGCCAGGGTACCATCTGATAAATGATTCTACCCAGGCTTATAACTTCACTGTGGCCAATCTCATTTTGGGGGATCTTTGGTTACCTTCAACTGGTGTCACATACACTCCTGGTTTTGGGGATTGA 3060 0.4598 MALSSTKELSRKVVTQTLIFFLLFFPSVFGASHGSSINSLGSEFLKVSPSEFAGTVKSVVDVLQDVTSILSEFGSGFGDSLLSNAVSDCLDLLDLSSDELDWSVSATQTPQGKHNSTGNLSSDLRTWLSAALANQDTCMDGFDGTNGIVKGLVSSGLGQVMTLLQQLLTQVNPISNHFPFSSTQGQFPSWVKPGDRKLLQGNGVVADAVVSTDGTGNFTKLMDAVLAAPNYSMKRYVIYVKRGIYHENVEIKKKKWNLMMIGDGMNATVISGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECRISGTVDFIFGDATAIFQNCLIEAKKGLPNQKNTITAHGRKTPDEPTGFSIQFCNISADSDLVNSVNSTHTYLGRPWKPYSRTVFMQSYISDMLRPEGWLEWNGDFALDTLYYAEYSNYGPGAGLANRVKWPGYHVMNDSSQASNFTVSQFIEGNLCFLTHLVQFISMSVFWTKQLAPIPYATFIFIFFFFAPCEFTILRALEVSPSEFIGSVRTVGDVLQNVTSTLKSEFINVKSEFPLSDAIFACLELLDLSADELSWSISAVQTPQGKDNSTGNMSSDLRTWLSAVLANTDTCMDGFEGTSGNVKDLISNEIKEATWLLQKLVDQVKLVSGDFSRDKFPSWVEPLLQKKMMPADAVVAADGSGNFTTVMDAVNAAPEYRMRRFVIHIKKGLYTEKVEIKKKKWNLVMIGEGMDATVISYNLSRTQNLTTFGTATFGVSGRGFIAIDISFRNSAGPERNQAVALRSDSDLSVFHRCGIYGYQDSLYAHSLRQFYRECKISGTVDFIFGRASAVFQNCTILVKKGLQGQKNTITAHGETIPSRSSGFSIQFSNISADYDLLASVNTTSTYLGRPWKAYSRAVFMQCYMSEVLRPEGWLEWNGSLYLDTLYFGEYKNYGAGARVDSRVKWPGYHLINDSTQAYNFTVANLILGDLWLPSTGVTYTPGFGD* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00339 1019 SMART PMEI_2 32 170 IPR006501 GO:0004857
Lapu9g00339 1019 SMART PMEI_2 529 681 IPR006501 GO:0004857
Lapu9g00339 1019 SUPERFAMILY Pectin lyase-like 206 506 IPR011050 -
Lapu9g00339 1019 Gene3D Invertase/pectin methylesterase inhibitor family protein 561 681 IPR035513 -
Lapu9g00339 1019 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 177 IPR035513 -
Lapu9g00339 1019 Gene3D - 704 1019 IPR012334 -
Lapu9g00339 1019 Gene3D - 204 516 IPR012334 -
Lapu9g00339 1019 FunFam Pectinesterase 202 518 - -
Lapu9g00339 1019 SUPERFAMILY Pectin lyase-like 703 1016 IPR011050 -
Lapu9g00339 1019 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 165 IPR035513 -
Lapu9g00339 1019 CDD PMEI-like_4 550 682 - -
Lapu9g00339 1019 FunFam Pectinesterase 31 173 - -
Lapu9g00339 1019 FunFam Pectinesterase 700 1017 - -
Lapu9g00339 1019 Pfam Plant invertase/pectin methylesterase inhibitor 78 155 IPR006501 GO:0004857
Lapu9g00339 1019 Pfam Plant invertase/pectin methylesterase inhibitor 585 674 IPR006501 GO:0004857
Lapu9g00339 1019 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Lapu9g00339 1019 PANTHER PECTINESTERASE 56 509 - -
Lapu9g00339 1019 ProSitePatterns Pectinesterase signature 2. 850 859 IPR033131 -
Lapu9g00339 1019 Pfam Pectinesterase 706 1003 IPR000070 GO:0030599|GO:0042545
Lapu9g00339 1019 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Lapu9g00339 1019 CDD PMEI-like_4 17 175 - -
Lapu9g00339 1019 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 587 668 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00339 Lapu-Chr9 3534417 3544728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00339 19 516 Carbohydrate Esterase AT3G43270 63.938 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00339 K01051 - gmx:100801813 849.351