Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g00320 ATGGAGGCTCAATTAGAGGGGAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCAACTGAATTCAGTTCCATCAGATTGTAGGAGTCGTCAGCTGTTTCCTGCTGATCCTGAAATTCTTGCTACTGGTGATGCTTCTAACAATTTGTCTTCTGCATATGATGATGTTAACCTTGCCGAAGGAAAGAGAGAATTGGAGAAGAGGAGGAGAGGTGTGGTTGATGAAGGAGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTATACCCTATCATAGAAGGGGAGGATAAAAGTGGAAAGAAGACAAAGATAACTGGGAGTACTTTGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGTCGCCACAAAGTCTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGGAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACGCATCCTGATGCTAGTGTAGTTAATGATGGCTCTATGAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATATTGTCCAATATGCATTCAAATGGCTCAGATAATATGACAAGCCAGGATGTTCTATCTCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGAAGAAATATAGCGTCTTTATTGGAGGGATCTCAAGATTTGGTGAAAGCTGGAACGTCTGGAGCAGCACAGAATGTTCCTAACACAAATTCCAATTGTCCTGAAACGTCCAGACCTTTTGATACTTCTATCAAGATGGATAATGGTCTAATCTGTCAGGACCCTCCAGAGTCTATGGTACAATGTGAAACGACTCCTGCTAACGGTATGGCTAAAAAATTTATAGCTTCAGGCAGTGATGGAGTAGGAAGTTCAAAATCTCTTTCATTACCACAGTCCTCAAATGTACTTCTGTCACGGGATAGCCTTCCACCCCAATCAATCTTAACAGAGACTACGGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAACAGTGCATATGATGATGTACAGGATTATGTTGACAACGCAAGAAATTCTCGTCCTCCGTTGCCTTCAGGGAACGGGTCTCTCGATCATCCTTTATGGGTCCAATGTGACCCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGACCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGATCACAGATTCTTAACTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGGCCCGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCTGCTTGGGAAGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAACTTGCTGTGCCGAATGATTCTTTTTGGAGAACAGGATGGATATATACAAGAGTGCAGCACTCGGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTACCATTGCGATTCAAAAGTCTGCAGAATTGTCAGATTTTTTGTGTCAAACCACTTGCTGTTTGTTCAAGTTCTCGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTGCTGTCTAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAAGATAGTTGTTATGATTTGGTTGATGCTGATGCTACCATTGCACATCATGAGCTTCAGCATCTCAGCTTCTCTTGTCATATACCAAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGGCAGCTGAGACTGCTGATGACATCCAAATAAAAACTAAACTAATGGAAGAAAAGACTCAAGCATTGTATTTTGTACAAGAAATGGGTTGGCTCCTTCACAGAAACCGTGTGAAAGTTAGGCTAGGTCCTGTGGCACCTGCACAAGATTGCTTCCATTTTAATCGGTTTACGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAATGTTATCTTTGAGGGCACTGTTGATACAGGAGAGCATACCTCAGTTGAGTTAGCATTGTTAGAGATGGATCTTCTGCACAAAGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTTCTGTTAAAATTTGTGCCAGTTAATGCTTCAGACGGTGGAGACAGTAAAGAGAAGCAAGTCAACAAGTCCCCTAACAGATTCATATTCAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGCATGCATGGTTCGGAGAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGAATTGAGGCATGGAAAATTGCTCGGGACTCTACAGGTTTGACCCCCTATGACATTGCATCCCTCCGGGGCTACTACTCCTACATTCAACTTGTCCAGAGGAAAACAAGCAACACACGCAAAAGTGACCATGTGCTTGATATCCCAGGCACTCTTGTAGATAGTAACATAAAGCAGAAGCAATCAGACGGGCATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAACAACAGCAATGCTGCGACATTGTGGGCTATGCCAGCAGAAGTTGGCATATGGTGGTGTGAGAAGTGCACTGGTTTATAGGCCTGCAATGCTGTCAATGGTTGCCATCGCAGCTGTGTGTGTCTGCGTCGCTTTGCTCTTCAAAAGCTCACCCAAAGTTTATTATGTATTCCAGCCATTCAGTTGGGAATCATTGGAATATGGGTCTATGTAA 3096 0.4328 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTATQLNSVPSDCRSRQLFPADPEILATGDASNNLSSAYDDVNLAEGKRELEKRRRGVVDEGGVEMNDGAGSLNLNLGGQVYPIIEGEDKSGKKTKITGSTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSMNEEKGSSYLLMSLLRILSNMHSNGSDNMTSQDVLSHLLRNLASLAGTINGRNIASLLEGSQDLVKAGTSGAAQNVPNTNSNCPETSRPFDTSIKMDNGLICQDPPESMVQCETTPANGMAKKFIASGSDGVGSSKSLSLPQSSNVLLSRDSLPPQSILTETTVGRIGLSNIDLNSAYDDVQDYVDNARNSRPPLPSGNGSLDHPLWVQCDPLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTVYLRLENSAWEELCYNLGSSLRKLAVPNDSFWRTGWIYTRVQHSVAFLYNGQVVLDVPLRFKSLQNCQIFCVKPLAVCSSSRVQFIVKGFNLLLSNTRLLCALEGKYLVQDSCYDLVDADATIAHHELQHLSFSCHIPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDIQIKTKLMEEKTQALYFVQEMGWLLHRNRVKVRLGPVAPAQDCFHFNRFTWLVGFSMDHDWCAVMKKLLNVIFEGTVDTGEHTSVELALLEMDLLHKAVKRNCRPMVELLLKFVPVNASDGGDSKEKQVNKSPNRFIFRPDTVGPAGLTPLHVAASMHGSENVLDALTDDPGLVGIEAWKIARDSTGLTPYDIASLRGYYSYIQLVQRKTSNTRKSDHVLDIPGTLVDSNIKQKQSDGHRSSKVSSLQTEKIETTAMLRHCGLCQQKLAYGGVRSALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSM* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g00320 1031 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Lapu9g00320 1031 Gene3D - 790 930 IPR036770 -
Lapu9g00320 1031 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Lapu9g00320 1031 MobiDBLite consensus disorder prediction 446 474 - -
Lapu9g00320 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 111 836 IPR044817 GO:0003677
Lapu9g00320 1031 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Lapu9g00320 1031 MobiDBLite consensus disorder prediction 419 474 - -
Lapu9g00320 1031 Pfam SBP domain 148 221 IPR004333 GO:0003677
Lapu9g00320 1031 Gene3D - 140 209 IPR036893 GO:0003677|GO:0005634
Lapu9g00320 1031 SUPERFAMILY Ankyrin repeat 802 917 IPR036770 -
Lapu9g00320 1031 MobiDBLite consensus disorder prediction 212 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g00320 Lapu-Chr9 3224538 3236619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g00320 1 1030 SBP-box Gene Family AT3G60030 47.373 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu9g00320 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g00320 - - gmx:100776125 1821.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g00320 9 3224538 3236619 Lapu9g00320 9 3224538 3236619 ECH
Lapu3g00388 3 3961259 3968373 Lapu9g00320 9 3224538 3236619 PCT